CI01000013_07093361_07101998 (MTSS1LA)


Basic Information

Item Value
gene id CI01000013_07093361_07101998
gene name MTSS1LA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 7093361 ~ 7102368 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_07093361_07101998.mRNA
ATGATCGCCCCACTCCAAGACAAGATAGAAGAGTGGAAGAAAACGGCTGCCCTGCTTGATAAAGACCACGCCAAAGAGTACAAGCGCTCAAGGCAGGAGATCAAGAAGAAGTCATCTGACACAATAAAGCTGCAAAAGAAAGCCAGAAAAGGTCGAGGAGGACTACAGCCACAGCTGGACAGTGCCATGCAGGATGTGAGTGACATGTACCTGCTGATGGAGGAGACTGAGAAGCAGGCGGTGCGCCGAGCCCTCCTGGAGGAAAGGGGGCGCTACTGCACTTTCATCAACTTCTTGCAGCCTGTAGTGATCGGTGAAATTGCCATGCTGGGAGAGGCCACTCACCTCCAGGCCATTATTGATGATCTCACTGTGTTGACCACTGACCCACATAAACTACCAGAAGCCAGTGAACAGGTGATTTTGGATCTTAAGGGGTCTGACTACAACTGGTCCTACCAGACCCCACCTTCTTCTCCGAGTAGTGTTGGATCCAGGAAGAGCAGCCTTTGCAGTTTGGTGCATCTGCCACCAGGTGGCGCCCATCGCCTGAGCAGCGTCTCCTCTCATGATTCTGGATTTGTCTCTCAAGATGCGAATATGCACTCCAAACCTCCGTCTCCCATGCCGTCTGACATCACTAGCCAGAAGTCATCCAGTTCTGCATCCTCAGAGGCTTCAGAAACCTGTCAGTCAGTCAGTGAGTGCGGCTCTCCCACAATATTCGGCTCATCCTTTGCTACCTTTCGCCCTGCTCACTGTTTTAATGACTCCATCAGGCCTCACTCTTACATACTTCCTGCGTCCCCTTCCTATAATCAGTCCCCAGGATCAAACTCCCCTTCACCCACATCAAAGGTTCCTTACTGGAAGCAGGACTGGTCAAAGGCAGGTCACTATGAGCAGACGGCTGTAACCCAACAGCGCAGGACTGAGGCTGCAGAACCCTCTAGTGGACTGGGAGGAAATGGAATAATTCACCCTGAGGATCCTTATAGGCTAGCTAGGATGAATTCTAAAGATGTCGCTGCCAAGCATGGTAGGCCGATGTCATCCGCCGCTAGTGAGCTGGCTATGGTTCTGACTCGGGGGCTTAGTATAGAACAGCAGCAGAAGAGCAGCTGTGACTCTCTGCAGTACTCCAGTGGATACAGCACACAGAACACTACACCATCATGTTCAGAGGACACTATCCCTTCACAGGGATCTGAATATGATTGTTATTCCATGAATGGCGATGGTGACAACGACACACAGACAGACTTCGACAAGTCCTCCACCGTCCCTCGCCACAGCAACCTGGCTCAGAACTACCGCCGTATGATCCAGACCAAGAGGCCCGCCAGCACCGCAGGACTGCATGGAGCACTGGGTGCCCAGGGAGCCCCAACAACCAATGGGAAAGGAAGTGGTGTCATAGCCTCAGGAACAGCCACCATTCGTAGAACCCCTTCTTCTAAAACAAACGTGAGACGCACCCCGTCTAGTGTGGGTCCGATCCCTATCCGACCACCTATCGTCCCTGTAAAGACCCCCACTGTCCCAGACTCACCTGGATTCCCCAGCCCTCCTCCTGAGTACAATGGAAGTGAGGAAAGTCTGTACAATGATGAAACGTTGGAAATTTTAGACTACAAAGCCTCCCCCAAGCGAATGAGCCTGCCATCGTGGGGAGGAGCTGGTGGTGGAACTGTCTATGCCCAGCAACCTGGAGCTGCGGGCTTCACTTCAGAAGAAGACCAGATGCTTGCCGCCAATCGCCACAGTCTGGTGGAGAAGATTGGAGAGCTGGTCGCTAATGCTCATGCTCTCGGTGAGGGCCAGTTCCCGTTCCCCACGGACCCTCAGGCCAGCCACCAGCAGGATCAAGAGCATGAGAAGAAGGGAGAAGATATGTTGAAGACAATCCGTAGAGGGAACTGGCCCAAGTATGGTAAGGTGTGTGATCTCATTTACTCTTTTACAGATTATGATGGCTCTTTTGATCTTTTGTACTTTGTACAGCAGGGCCCGAGATTACCCGTATGTGGGGTTTATGTGACCCATCCCTGCGATTAAATCTAATTGATGGGATAAAGAGCCGGACGTGGGCTGAAGGAGGCGTTTGATGTGGCAGCTGGAGATCGTGAGAATGAGGAGATGCAAAAGCCTCGGCTCCAGTCACTCATTCACTCACTCACTCATCACATCCCTGTCGCCGCGTCATCCCCCCTTCCTGATGGACGGGACCCCCACACTCCGCTCCGGGCTACACATACAGGGATGTGACACTGGTGCGCATCCCGCCGTCAGTCGCGCAGCAAAGTGGCACGCGTGTCATTTTCACTGACAGACGCGCTCGTCTGCCTATCCACGTTCCTCCGCTGCAAATGCGAGACATGACTGTATACTGATGGAGCCACGTCGCAAACAAGACAGCGCAGCAGAA

Function

symbol description
mtss1la Predicted to enable actin binding activity. Predicted to act upstream of or within plasma membrane organization and ruffle assembly. Is expressed in brain and neural tube. Orthologous to human MTSS2 (MTSS I-BAR domain containing 2).

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K20128 MTSS1; metastasis suppressor protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_07093361_07101998.mRNA True 2428 mRNA 0.53 12 7093361 7102368

Neighbor

gene id symbol gene type direction distance location
CI01000013_07060006_07064836 MAPK12A, MAPK12 coding upstream 27958 7060006 ~ 7065403 (+)
CI01000013_07047472_07055840 SELO, SELENOO coding upstream 37438 7047324 ~ 7055923 (+)
CI01000013_07036369_07042930 TRABD coding upstream 50326 7035411 ~ 7043035 (+)
CI01000013_07023379_07027997 PANX2 coding upstream 64920 7023094 ~ 7028441 (+)
CI01000013_07012984_07019146 MLC1 coding upstream 74215 7012723 ~ 7019146 (+)
CI01000013_07119401_07124434 TSHZ3A coding downstream 17033 7119401 ~ 7124627 (+)
CI01000013_07131096_07141914 NA coding downstream 28584 7130952 ~ 7142042 (+)
CI01000013_07148102_07150807 PDF coding downstream 45684 7148052 ~ 7150955 (+)
CI01000013_07154745_07159568 PECR coding downstream 52377 7154745 ~ 7159608 (+)
CI01000013_07277014_07279249 NA coding downstream 174242 7276610 ~ 7279319 (+)
G81939 NA non-coding upstream 7860 6987893 ~ 7085501 (+)
G81883 NA non-coding upstream 188017 6905056 ~ 6905344 (+)
G81920 NA non-coding upstream 205540 6887493 ~ 6887821 (+)
G81918 NA non-coding upstream 211137 6881956 ~ 6882224 (+)
G81904 NA non-coding upstream 229940 6863202 ~ 6863421 (+)
G81985 NA non-coding downstream 88581 7190949 ~ 7192986 (+)
G82010 NA non-coding downstream 164726 7267094 ~ 7267316 (+)
G82013 NA non-coding downstream 167249 7269617 ~ 7269836 (+)
G82017 NA non-coding downstream 173309 7275677 ~ 7275887 (+)
G82045 NA non-coding downstream 237361 7339729 ~ 7340751 (+)
CI01000013_06076169_06080164 NA other upstream 1010994 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 1033865 6049864 ~ 6060269 (+)
G80845 NA other upstream 2257129 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 3027532 4050837 ~ 4065829 (+)
G80062 NA other upstream 3508577 3584008 ~ 3584784 (+)
G81994 NA other downstream 233577 7335945 ~ 7338239 (+)
G82168 NA other downstream 925970 8028338 ~ 8041343 (+)
G82581 NA other downstream 2226961 9329329 ~ 9334948 (+)
G84005 NA other downstream 2499243 9601611 ~ 9602235 (+)
G84194 NA other downstream 2928240 10030608 ~ 10036953 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location