CI01000013_07154745_07159568 (PECR)


Basic Information

Item Value
gene id CI01000013_07154745_07159568
gene name PECR
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 7154745 ~ 7159608 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_07154745_07159568.mRNA
ATGTCAAACGAGGACAGGGTCGTTTTAGCTCTCGGTGGAGCAGGAACTGTCGGCTCCGGGATAGTGAAAGCTCTCCTGGACAGAGGTTTCAAAGTTGCTGTGATCTCCAGAGACAACAGCAAGTTGGAGAAACTCAAAGGGTTTGTTTCACCTAGCACAAAAACTAACCTGACCACTTTAGTGGGGAATGTTGGCTCAGAGGAAGGAGTGGAGGAGGTGAAACAGGCCTTGCTTAAGTCTGTGGGAAAGATTACAGATGTGGTGTCCTCTCTGGGCTTCAGCTGGTGGCAGGGTGGTCTACCACACACTCAACCCCTCAAAGAACTGCACTGGGTTATTGAGACCCTGCTTTTCAGCACCTTTGTGTCTTGGAAAGCATTCTTTCCCCTGGTGAGAGATGATCCTAACTGCACCTACACGTTTATCACAGGAGGCGCTGGAGAGAAAGTGCTGATGCCTGGCACAGGGTTCCTGACCGTAGGGGCAGCTAGTGCTCTGGCGTTCTGTCAGGTTCTGCGTGAGGAGTACCCAGAGGTGCCATGCAAACTCAACCAGGTGAAAATCAACACGGGTGTGGCGGCCCCAGACCGAATGGCCCCCGGGTACCTGAACCACTTGGATTTGGGGGAGGCTGTGGCAGCGCTGGTGGAGCGCCGCAATGCGTCCCACACAGTGTTCGCTGTGAGCTGTCCTGCCGATCTAAAAACTGTTATTTTGGAAGGCAATCTACAGGAATTGGGGCATTTATGTAGAGGGACAAGACAAGTGAACTGGAATGGATTTAAAAAGCCACCCATAGACAAAGAGTCATACAGTGAAGCCATTAGAGTAATCGTCATCCACATAGAGGGTATTCTAGGACAGAGGTTAAGCCTCCTGATGCAGAGTGGCATGTTTTCTCCTTCGGCCCGGAAACTTTCGGAACAATCCAGCCATCTGCCCATCAGGCGGCTCGGCCTCCCTCTGCGCAATCGCCTCTCCCAGCGATTTTCTTCCCCTTCAGATTTTAACTAATCGATTAAAAGGTGGTCAAATGCATAGAAGAATTGGAAAA

Function

symbol description
pecr Predicted to enable trans-2-enoyl-CoA reductase (NADPH) activity. Predicted to be involved in phytol metabolic process. Predicted to be active in peroxisome. Orthologous to human PECR (peroxisomal trans-2-enoyl-CoA reductase).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_07154745_07159568.mRNA True 1054 mRNA 0.51 7 7154745 7159608

Neighbor

gene id symbol gene type direction distance location
CI01000013_07148102_07150807 PDF coding upstream 3790 7148052 ~ 7150955 (+)
CI01000013_07131096_07141914 NA coding upstream 12703 7130952 ~ 7142042 (+)
CI01000013_07119401_07124434 TSHZ3A coding upstream 30118 7119401 ~ 7124627 (+)
CI01000013_07093361_07101998 MTSS1LA coding upstream 52377 7093361 ~ 7102368 (+)
CI01000013_07060006_07064836 MAPK12A, MAPK12 coding upstream 89342 7060006 ~ 7065403 (+)
CI01000013_07277014_07279249 NA coding downstream 117002 7276610 ~ 7279319 (+)
CI01000013_07286519_07288160 NA coding downstream 126834 7286442 ~ 7288547 (+)
CI01000013_07375912_07390782 MLYCD coding downstream 214210 7373818 ~ 7391003 (+)
CI01000013_07765924_07780475 NA coding downstream 605077 7764685 ~ 7780716 (+)
CI01000013_07791141_07802608 NA coding downstream 631096 7790704 ~ 7802710 (+)
G81939 NA non-coding upstream 69244 6987893 ~ 7085501 (+)
G81883 NA non-coding upstream 249401 6905056 ~ 6905344 (+)
G81920 NA non-coding upstream 266924 6887493 ~ 6887821 (+)
G81918 NA non-coding upstream 272521 6881956 ~ 6882224 (+)
G81904 NA non-coding upstream 291324 6863202 ~ 6863421 (+)
G81985 NA non-coding downstream 31341 7190949 ~ 7192986 (+)
G82010 NA non-coding downstream 107486 7267094 ~ 7267316 (+)
G82013 NA non-coding downstream 110009 7269617 ~ 7269836 (+)
G82017 NA non-coding downstream 116069 7275677 ~ 7275887 (+)
G82045 NA non-coding downstream 180121 7339729 ~ 7340751 (+)
CI01000013_06076169_06080164 NA other upstream 1072378 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 1095249 6049864 ~ 6060269 (+)
G80845 NA other upstream 2318513 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 3088916 4050837 ~ 4065829 (+)
G80062 NA other upstream 3569961 3584008 ~ 3584784 (+)
G81994 NA other downstream 176337 7335945 ~ 7338239 (+)
G82168 NA other downstream 868730 8028338 ~ 8041343 (+)
G82581 NA other downstream 2169721 9329329 ~ 9334948 (+)
G84005 NA other downstream 2442003 9601611 ~ 9602235 (+)
G84194 NA other downstream 2871000 10030608 ~ 10036953 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013297 si:dkey-238o13.4 coding NC_007129.7 CM002902.2 14671789 ~ 14677936 (-)