CI01000013_10821530_10827412 (SEPHS1, SEPHS1.L)


Basic Information

Item Value
gene id CI01000013_10821530_10827412
gene name SEPHS1, SEPHS1.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10821530 ~ 10827977 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_10821530_10827412.mRNA
GCACATTTTCGAGGCGCCCTTTCTGCGCGCGGTGCATTGCGGGAACGTCGCGTCTCTTGTATCGAGCGAAACCGATAGCCATTGTGCGTGCCAGTGAAGTTTTTTTAAACATGTCGGTGCGGGAATCTTTTAACCCAGAGAGTTATGATCTGGACAAGAACTTCAGACTAACGCGCTTCACAGAGCTCAAGGGAACAGGTTGCAAAGTCCCTCAAGATGTGCTCCAAAAACTTCTAGAATCCCTGCAGGAAAACCATTATCAGGAAGATGAGCAGTTCCTCGGGGCTGTAATGCCCAGATTAGGCATTGGTATGGACACTTGTGTGATTCCGTTGAGACATGGAGGCTTGTCACTTGTGCAGACCACAGACTATATCTACCCCATAGTGGATGATCCATATATGATGGGGAGAATTGCTTGTGCCAATGTGCTGAGTGACCTGTATGCCATGGGTGTAACAGAATGCGATAACATGCTGATGCTCCTTGGTGTCAGCAACAAACTCACAGAGAAGGAGCGTGATAAGGTCATGCCGCTGGTCATCCAGGGGTTTAAGGATGCATCCGAGGAGGCAGGAACCTCAGTTACAGGTGGTCAGACTGTTATAAATCCTTGGATAGTCCTGGGAGGCGTGGCCACAACAGTGTGCCAACCTAATGAGTTCATTATGCCAGATAATGCAGTACCAGGGGATGTGCTGGTTCTTACCAAACCACTCGGAACACAAGTGGCGGTTGCAGTGCATCAGTGGCTGGACATTCCAGAAAAATGGAATAAGATAAAGTTGGTTGTCACTCAGGAGGATGTTGAACTGGCTTATCAGGAGGCCATGTTGAACATGGCTCGACTCAACAGAACAGCTGCCGGGCTGATGCACACCTTCAATGCACACGCAGCGACTGACATCACAGGGTTTGGGATCCTGGGTCACGCTCAGAACCTGGCGCGGCAACAGCGTACAGAGGTGTCCTTCGTCATTCACAACTTGCCAGTTCTTGCCAAAATGGCTGCCGTCAGCAAAGCTTGCGGGAACATGTTTGGCCTTATGCACGGCACCTGCCCAGAGACCTCAGGAGGTTTGCTGATCTGTCTTCCACGTGAGCAAGCAGCCCGTTTTTGTGCCGAGATCAAATCTCCCAAGTACGGCGAGGGTCACCAGGCGTGGATCATCGGCATCGTAGAGAAAGGCAACCGCACGGCACGCATCATCGACAAACCCCGCATCATCGAAGTCGCACCGCAGGTAGCCACGCAGAATGTCAACACCACCCCAGGAGCCACATCTTAAACCTGAGTGCCCCAAACAGCTAGCGTACTCTAGCCTCACCTGAAAATATATCAGCGTAATGATATATAAAACATCTGCCCACCTTGGCCTTCCGGCAGATTCTACATGGACACGGTTATAAAGCAGAAGAACATTTAACGAAGAAAATTCAATTGCCTTTTTATGTCTATAGTTTTCTGTTACATTAACTGACCCATGCACCTGATTGTGAGGCAGCTTCCAAGTAGAACGTATGAGTAATAGTATAATTCTTATCTGATACTGTTGATTACTTCCAGATATCTTCTGCTCGCACATCACCTGCGGTTTCATACATAGCCATGATGTGTTTTAGCACATTTCTTGTTTTCTTGTTAGTATGCACAACCCATGCGGTAGGTTACATCATAATCTTTGCCTCAAACAATAGTTAATGAAGCTGCAGTGACGAGGAAGAGTGTGTCAGGAAAGGATTGCTTTTTTTACTTTTGTATTATCCCTTGTGTGTCGGATAAAAAAAAAAACCTCCCTCACTGTTTGGTGGAAACTTTGTTGGACTGAAGGAATCCAAGGTTATACCTCTCTA

Function

symbol description
sephs1 Predicted to enable protein heterodimerization activity; protein homodimerization activity; and selenide, water dikinase activity. Predicted to be involved in selenocysteine biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be located in nuclear membrane and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human SEPHS1 (selenophosphate synthetase 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01008 selD, SEPHS; selenide, water dikinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_10821530_10827412.mRNA True 1854 mRNA 0.48 9 10821530 10827977

Neighbor

gene id symbol gene type direction distance location
CI01000013_10808688_10819703 NA coding upstream 1605 10808688 ~ 10819925 (+)
CI01000013_10756927_10790192 FRMD4A coding upstream 31041 10756927 ~ 10792761 (+)
CI01000013_10586449_10594082 NA coding upstream 227088 10585818 ~ 10594442 (+)
CI01000013_10502138_10525511 GRM3 coding upstream 295856 10500690 ~ 10525674 (+)
CI01000013_10335904_10336688 NA coding upstream 484634 10335904 ~ 10336896 (+)
CI01000013_10865753_10884937 MAPK8IP2 coding downstream 37776 10865753 ~ 10886301 (+)
CI01000013_10916049_11031034 NA coding downstream 85718 10913695 ~ 11031159 (+)
CI01000013_11063977_11172626 NA coding downstream 236000 11063977 ~ 11172634 (+)
CI01000013_11224779_11252341 SHANK3A, SHANK3 coding downstream 396721 11224698 ~ 11253004 (+)
CI01000013_11271292_11274155 NA coding downstream 442629 11270606 ~ 11274754 (+)
G84410 NA non-coding upstream 13567 10807309 ~ 10807963 (+)
G84386 NA non-coding upstream 163953 10644446 ~ 10657577 (+)
G84390 NA non-coding upstream 177725 10633395 ~ 10643805 (+)
G84405 NA non-coding upstream 207153 10614151 ~ 10614377 (+)
G84383 NA non-coding downstream 13739 10841716 ~ 10850104 (+)
G84444 NA non-coding downstream 77208 10905185 ~ 10905428 (+)
G84445 NA non-coding downstream 83196 10911173 ~ 10911440 (+)
G84464 NA non-coding downstream 183358 11011335 ~ 11011541 (+)
G84466 NA non-coding downstream 187417 11015394 ~ 11015705 (+)
G84250 NA other upstream 605568 10215127 ~ 10215962 (+)
G84215 NA other upstream 742194 10076454 ~ 10079336 (+)
G84194 NA other upstream 784737 10030608 ~ 10036953 (+)
G84005 NA other upstream 1219295 9601611 ~ 9602235 (+)
G84768 NA other downstream 1342012 12169989 ~ 12170818 (+)
G84790 NA other downstream 1356965 12184942 ~ 12201975 (+)
G84864 NA other downstream 1537072 12365049 ~ 12375905 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location