CI01000013_11271292_11274155


Basic Information

Item Value
gene id CI01000013_11271292_11274155
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 11270606 ~ 11274754 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_11271292_11274155.mRNA
ATATATAAGCAAGTAAGCATGTAACAACAGTCTTTAGTAAAGCTGAAAAATGAATGAAAATATAATAAAATCTAACTCAAAATATTAATAAATATTTATTTAGTATGTATGTAATAGTATATACATTATATAAAATAAAGATATGTAGCAAAGACAGGAACTGACCTTCAAATATACACATTGTTTTTGATAGTTTTGTATCCAACTTACCATTGTACTGATTTACTAACTTGCAGAAATTCACATTTGCTGTACTAATTATGTAACTACATATATAAATATAAATATGTATAAATAAAATATAAAAAAAATTTTATTATTATTTTGTATGTCACTTTATCATATATTTTTATTATGTTGACACCAGCACTTATTGAAATTGTAATTTTTTACTTGGTGAATAAAGTTTCTAAAGTCTAAGTAATTATTGAAATGAATTATTAGGGTGTTGCTGTAGAAAATGTACTGTAAAAAAAAAAAAAAAAAACACTATAAAGTTCTGTTGAAACGCTGTCTTAGCTCTTATAAGCTCCACCCTAATTTGCATGTGTCTGGGATGTAAAGAGACTGAGAGACACTGTAAAGAGCTGAGAGACACTCTTGTGCTTCTTGGCAGTTGGACCAGACGCTCAAAGAGAGTGAGGGAAAGACAACTAGGAAACATTTAATATATTGTAGGTGGCAAAATGGCCTGTAGACTGTCCATTACAGAGGAGGATTTCTACTGCCCTATCTGCTGTGACATCTTCAGGGATCCAGTTCTCTTAGCCTGCTCTCACAGCATCTGTAATAACTGTGTGAAAACCTTCTGGAATCGGCGAGGAATTCAAGAGTGTCCCATCTGCAGAACTGTGTCCTCCAACCCTGATCCACCCATAAACATCGTGCTGAGAAACATGTGTGTTCTGATGAGAGAAGAAACAACTCAGGACCTTCCCGTAGAGACGGTGGGGTTCTGTAGTCTTCATGGAGAACCTCTAACTTTCTTCTGCACTGAAGATCAAGAACTAGTTTGTGGACAATGCAGAAACGCTAAATCACATAAGAACCACCGCATCCATTCAACAACAGAGGCATCACAGGACCTCAGGCAAGAGCTCCGGCTGAAACTAAAGGCCTTTCTGGAGAAACTTAGAGTCTATGAACGATTTAAACAGTCCTGGGATGAAACAGCGGAGTACATTAAGTCGGCATACAAATGCAGACAGACCCCCTCCAAGACGGGCTTGTGGTATGTGGGCTTCTGCAATGGTAAATACGGGAAGGGCTATTCTCCAGAGATTCGGTCCCTTCTACGGGTGAGCCAGAGAATCCAGAGGATCAGGGTGCAGCTGGACTGGGACAAGGGCAAAGTCATTTTCACAGACTCGGGCCGTAATATTGGTCTGCATGTGTTTAAACACACGTTCACTGAGAGAGTATTCCCTTACTTTTATAATCACTGTATGCAACATCCGCTGAGGATCATACCAGTAAAAACAACTGTGGAAGCACACATTTAAAACCAATACAACTTTTAATCTGGTGAAGTTGATAGGTTAGCAGTGATATCAGTTATGAATTAATCCTAAGGAGAGAGTAGTATATGAATTAAGCCCTGGCTATACTTCGGGGTTTTTTACGCGTACGCTAGTGTAAGCGCACAGTTGAACACACAGCCTTGGAAAGTGTACTTCATTTGACTCGTACACATACACAGGCATTCGATGCATGTGCAGTTTTGAGCAATCTCTTGCCACAAGTTACACCCCATGTAAACATCTTTGTATTTTTTCATGCTAGAGTTGTACAAATGAGGGTACTTTCTAACCTCTTCGCACAATCTCTCGTCTATGTAAGCCTCCATTGTCACGGTAGTTTGCGTGTGTTCCTGTCTGTTCTGTTTATGCAGTTTTTCTTTGACTTCCTTGTGAATCAACGCCCCCAGGGCACGGTTGCCACCTTGTGGATAAACTATTTACTGCAAAAAAATTAATTGCGCATGTGCGACCTGGGCGTACAAGTACGTGCGGTTGAAAAAAATCCGGCGGTGCGCGCACTGTATGCTGAACCTCGCGTACACGTAAAAAGTGAACTATACTTTTGGCTTTACAGTACTGCA

Function

NR:

description
novel zinc finger protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_11271292_11274155.mRNA True 2101 mRNA 0.39 3 11270606 11274754

Neighbor

gene id symbol gene type direction distance location
CI01000013_11224779_11252341 SHANK3A, SHANK3 coding upstream 17602 11224698 ~ 11253004 (+)
CI01000013_11063977_11172626 NA coding upstream 97972 11063977 ~ 11172634 (+)
CI01000013_10916049_11031034 NA coding upstream 239447 10913695 ~ 11031159 (+)
CI01000013_10865753_10884937 MAPK8IP2 coding upstream 384305 10865753 ~ 10886301 (+)
CI01000013_10821530_10827412 SEPHS1, SEPHS1.L coding upstream 442629 10821530 ~ 10827977 (+)
CI01000013_11287928_11292308 NA coding downstream 13174 11287928 ~ 11293107 (+)
CI01000013_11326503_11335221 NA coding downstream 51749 11326503 ~ 11335514 (+)
CI01000013_11365641_11366348 NA coding downstream 90431 11365185 ~ 11366708 (+)
CI01000013_11384868_11387085 PDP2 coding downstream 110114 11384868 ~ 11387402 (+)
CI01000013_11389357_11391382 NA coding downstream 114603 11389357 ~ 11391382 (+)
G84425 NA non-coding upstream 14142 11253612 ~ 11256464 (+)
G84486 NA non-coding upstream 132385 11137893 ~ 11138221 (+)
G84437 NA non-coding upstream 141656 11127578 ~ 11128950 (+)
G84473 NA non-coding upstream 223966 11046375 ~ 11046640 (+)
G84470 NA non-coding upstream 245790 11024615 ~ 11024816 (+)
G84492 NA non-coding downstream 9549 11284303 ~ 11284657 (+)
G84493 NA non-coding downstream 11797 11286551 ~ 11286854 (+)
G84417 NA non-coding downstream 15529 11290283 ~ 11303625 (+)
G84420 NA non-coding downstream 24246 11299000 ~ 11301083 (+)
CI01000013_10756927_10790192 FRMD4A other upstream 485849 10756927 ~ 10792761 (+)
G84250 NA other upstream 1054644 10215127 ~ 10215962 (+)
G84215 NA other upstream 1191270 10076454 ~ 10079336 (+)
G84194 NA other upstream 1233813 10030608 ~ 10036953 (+)
G84005 NA other upstream 1668371 9601611 ~ 9602235 (+)
G84768 NA other downstream 895235 12169989 ~ 12170818 (+)
G84790 NA other downstream 910188 12184942 ~ 12201975 (+)
G84864 NA other downstream 1090295 12365049 ~ 12375905 (+)

Expression


Co-expression Network