G84425


Basic Information

Item Value
gene id G84425
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 11253612 ~ 11256464 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU96080
GCACATGTTTGTCATGGATTCTTGCCGTGGTGATTCATTGAATTCATTGAAGTATTTTATACATTTTTGGCAAATTCTAAAATCACTCAGTTGTTCACTCATTTACTATTCACTATATAGTTGACGAAATTGAGGGTATACAAATTTCATCGTGAATTAGGAAAAACTACTTTAAATTCACACTGCGTTTTAATCCGATTTACCTACCACCTACAGAACAAATGTAGTTTGAAAATTTGATTTTGTTTTTTTGCTGTCCAAACTACAAAAATACACCAAAACTTGTGTTTGTCTGAACAAAGTCCATGCAGAACATCTCATAATTGATTCTTCAGTTTTATTAGCATGATAAGCACCCACTAATCCCTTAGTCCCAAATCCATTTTTTTCCCACTTTACTATCTGCTTCTTACCACTGCATCATTAATCCAGAAAAAGGAGGGATGCTGTTGAGAAAAGGATGTTCAGTTGCCTTTCAGAGTATTTTTTTAGGAGTGGATGAGCAGACTGGGCGTGGCCGGATCCTCTCTGTCTACCGCCTGCCCCCTTCTGGCTGAGGGACGTACTACACTCGGAGAATGTTTAACCAATACTAGTGGCTTTTTTTTCATAATCAGACTCTTACTTTGGGTTTCCAAAGGAAATATGACATTAGATAGAATATCTCAATGTATTTAAATAGCTTTGAAAATGGAGAGGGACAGCAAACAAGATGGACCGTGCAAAACTGCACCTGTCTCTCTCCCTAGATGATTTATTCCACTAATAATTTACTCATTTTTACCAATTATATACATATATATTTGACAGAAAAAAGTATATAGATATATGAATATAACATTTTTGTCATAAATATAAAACTTATATATGATATTATATATATAAAGACAAAAAACACTCTTGAAAATGATTTTTTGATGGTTATCCTTTTATGATGGACTGTAGCATGAAACGTTACATCACCATATGGAATGACGGTTGACTGATTTGTTTGATTTGCATTGTACCACCCCCTTTTTTGCTTTTGTTTGTTATAGTTTTACAGAACCTGGTCTTCCATCTTTAATTGAACATCCCACAGTGGGGTGTAACGGTGTGTGTTCACGTTTGAGCCCTTCACACAGACCACTTTTGTTATTTTTCGTTTGTAATTTTTCATATAAAACAAAACAAAAAAAGGGTTCCCAATACAGTTACACGTTTCATGCACACAACCACACTAGTTTCTTATCCAAATGTGACTTTGCTAAATCAAAAGTCTTCTTAATCTGGTAATAAGAAATTCTGAATAAGAAACTCTGCAATAAGTGTGCGTGTAAGCGAGTGTGTAAACAAATGTGTGTGAGGTGTGCATGACAGAACCACTGTGGGACCAGAAACATCTGTAATATTGCAGCTTATCTGGATGGTAATGACTGGTGTTCGACGTCTCATAAAGAAACCAGAAGACAGAATCTATAATTGTAAAAGTTTCCACCGTATGGCTTATATGGTAACCTGCTGTAAGCAGCATTTGGCTTATTTGTTTTGGCCTTTTTTTATTTCTTTATTTAATGTTATTTTTTCTCTCTCCTCATAGGTGGATTTTGTAGCTTGTGAAATATGATGCTTAGAAGAATTTTTATGAATTCATTTAGAATGAATTTTAGAATGACAATTATTTAAAAGATGACGCTAAGGACAAAAGATTTAATGAAAATACAATCAATCAAAAAAAAAAAAAAAAGCCCAGAGATCCTGCAGCTGTACATATGGTCAAATGACTAAAATATTTGCTTTTTATATCAATCACAAGCAATGTACATACGATAGTTTTCATATAAATTTTTAAAAATCAAAAAATATATAGATCTATATATGAATGTTTGGCATATATGCATAGTTAACCACCTGTCAAAAAAGGTGAAGATTTTACTCTTTGTATGGAGTTTGGGGGTGATTTGCACAAAACAAGGTGCTAGCATTTCAAGCCATTCATTCCCACCTGTCTGATTCTACCCTCCATTAGGGCTCAACAGATGCATATGACCCGTTTAAATATTTAAAACGAAGCCTGGGACACAGACACACTGATGTTCATTTCTATTATGTGCGCCATCAGTCCTGTTCAGTCTTGTGTGTTTTCTAAACAGACTGTGACAGCAGAAAGAGTTAATGCTTCACCATTGGTCATCTAAAATTAGTCCGCATTCAAACAGCCAAGGATGACAACACCCTCTCAGTGCTTCATCAGATAAGTGTTCTCGATGACACGCCAGTAACACTGTGTAGGAAAGCCCCTTCCGTAGGAGCAGCATTGACTCTGAGTAGATGCCATATTTGTCTTGACATGAATAAAAATGAATCTTTGAGCGAATGAAGTACAGCCTGTTCACACTGCAGCTAAATACGGATGTCACTCCTCTTCTTAATCCCATTCTGTACACACAGTTAAATATAGGAGTGGCATTCTACAACTGAATGAAAAATCAATTGTGAATTTAGGTGTTACAGCATTATGAGAAATGGATATTAATTTTGGGATTTGCAAAATATTACATTTAACACTAATTAATTTATTACTGTTTTTAAAGATTAATTAGACAGCAAAGGTAATCTAATATATATAATTATATATATATATATACAGTCAAACCAGAAATTATTCAGACACTAGATATATTACTAGATGTAATATAGGTATATAGTTCATTTATGTAAGTGAGGATAGCAAAATAAAGTAAACTGTGACATATTATACCAGTAAAATTGATAAAAATTTGGGACATTTTGACCTGACCATGTTTTGCTTAAGTGTTATCTGACATAATTAAGATTAATTTTTTCTGACACAGTTTAACTCTGAGATCTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96080 True 2853 lncRNA 0.34 1 11253612 11256464

Neighbor

gene id symbol gene type direction distance location
CI01000013_11224779_11252341 SHANK3A, SHANK3 coding upstream 608 11224698 ~ 11253004 (+)
CI01000013_11063977_11172626 NA coding upstream 80978 11063977 ~ 11172634 (+)
CI01000013_10916049_11031034 NA coding upstream 222453 10913695 ~ 11031159 (+)
CI01000013_10865753_10884937 MAPK8IP2 coding upstream 367311 10865753 ~ 10886301 (+)
CI01000013_10821530_10827412 SEPHS1, SEPHS1.L coding upstream 425635 10821530 ~ 10827977 (+)
CI01000013_11271292_11274155 NA coding downstream 14142 11270606 ~ 11274754 (+)
CI01000013_11287928_11292308 NA coding downstream 31464 11287928 ~ 11293107 (+)
CI01000013_11326503_11335221 NA coding downstream 70039 11326503 ~ 11335514 (+)
CI01000013_11365641_11366348 NA coding downstream 108721 11365185 ~ 11366708 (+)
CI01000013_11384868_11387085 PDP2 coding downstream 128404 11384868 ~ 11387402 (+)
G84486 NA non-coding upstream 115391 11137893 ~ 11138221 (+)
G84437 NA non-coding upstream 124662 11127578 ~ 11128950 (+)
G84473 NA non-coding upstream 206972 11046375 ~ 11046640 (+)
G84470 NA non-coding upstream 228796 11024615 ~ 11024816 (+)
G84466 NA non-coding upstream 237907 11015394 ~ 11015705 (+)
G84492 NA non-coding downstream 27839 11284303 ~ 11284657 (+)
G84493 NA non-coding downstream 30087 11286551 ~ 11286854 (+)
G84417 NA non-coding downstream 33819 11290283 ~ 11303625 (+)
G84420 NA non-coding downstream 42536 11299000 ~ 11301083 (+)
CI01000013_10756927_10790192 FRMD4A other upstream 468855 10756927 ~ 10792761 (+)
G84250 NA other upstream 1037650 10215127 ~ 10215962 (+)
G84215 NA other upstream 1174276 10076454 ~ 10079336 (+)
G84194 NA other upstream 1216819 10030608 ~ 10036953 (+)
G84005 NA other upstream 1651377 9601611 ~ 9602235 (+)
G84768 NA other downstream 913525 12169989 ~ 12170818 (+)
G84790 NA other downstream 928478 12184942 ~ 12201975 (+)
G84864 NA other downstream 1108585 12365049 ~ 12375905 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012602 NA non-coding NC_007129.7 CM002902.2 7651750 ~ 7663657 (+)