G84417


Basic Information

Item Value
gene id G84417
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 11290283 ~ 11303625 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU96065
TATATATATATAGCATTGGTACGTTTTTTTTCTGGTTGGTTCTTCACTTTGTAGACTTTGTAGACTTGAGGCTTTACGCAAGATGTCAGGCATCGCAGCTTTTAGGCATACGGTACTGGCTTCTGCGCATCTGGACACCAACGCAAAACAGAGGTGGAGACTGAGGTTCCCCTCTGAATAGTGCTGGGCCAGATGATCCCGCCCCTGGCAGCAAGGATTTACATGAACTCCGCCTCCTTCATGATGCTAGAACAAACAATAAAACCATTCAGCTACAGGAACTGCAGATGGTGTCAAATACCAATTATATGACAATTATATAACAATATTGCATTTGAAAGAAGTCATTAGATGTAACATTGCAAGATTTGCTTATGTTTAGTTCACTAATGTCTTTTACAGTAGCTCAAAAAAAAGAGTTTGAAATATCCAGTATACTCACACATTAGTGCTACGAGATCGCTCAGGGTTCCATGGCGTCTCCCACAGAGGGCCCACCATAGACCTGTTGATCTGTAAGCAGGAGGCTCTGATGGTACACAGCAAAACATCCAGTGTTAAATTAACACTTCCAGTGTCACCCGGTGTTTATATAATCCGGTGTGGATTATATAAACACTGGCAATGTTAATTTAACACTAACAGTGTTCATTTAACACTGGAGGTTTTACTGTGTAGAAAGGACAGATCATTGTGTCTCTCTGTTATTTATACTGGTACACTGTTCCCG
>TU96066
TATATATATATAGCATTGGTACGTTTTTTTTCTGGTTGGTTCTTCACTTTGTAGACTTTGTAGACTTGAGGCTTTACGCAAGATGTCAGGCATCGCAGCTTTTAGGCATACGGTACTGGCTTCTGCGCATCTGGACACCAACGCAAAACAGAGGTGGAGACTGAGGTTCCCCTCTGAATAGTGCTGGGCCAGATGATCCCGCCCCTGGCAGCAAGGATTTACATGAACTCCGCCTCCTTCATGACATTAGTGCTACGAGATCGCTCAGGGTTCCATGGCGTCTCCCACAGAGGGCCCACCATAGACCTGTTGATCTGTAAGCAGGAGGCTCTGATGGTACACAGCAAAACATCCAGTGTTAAATTAACACTTCCAGTGTCACCCGGTGTTTATATAATCCGGTGTGGATTATATAAACACTGGCAATGTTAATTTAACACTAACAGTGTTCATTTAACACTGGAGGTTTTACTGTGTAGAAAGGACAGATCATTGTGTCTCTCTGTTATTTATACTGGTACACTGTTCCCG
>TU96067
TATATATATATAGCATTGGTACGTTTTTTTTCTGGTTGGTTCTTCACTTTGTAGACTTTGTAGACTTGAGGCTTTACGCAAGATGTCAGGCATCGCAGCTTTTAGGCATACGGTACTGGCTTCTGCGCATCTGGACACCAACGCAAAACAGAGGTGGAGACTGAGGTTCCCCTCTGAATAGTGCTGGGCCAGATGATCCCGCCCCTGGCAGCAAGGATTTACATGAACTCCGCCTCCTTCATGACATTAGTGCTACGAGATCGCTCAGGGTTCCATGGCGTCTCCCACAGAGGGCCCACCATAGACCTGTTGATCTGTAAGCAGGAGGCTCTGATGGTACACAGCAAAACATCCAGTGTTAAATTAACACTTCCAGTGTCACCCGGTGTTTATATAATCCGGTGTGGATTATATAAACACTGGCAATGTTAATTTAACACTAACAGTGTTCATTTAACACTGGAGGTTTTACTGTGTAGAAAGGACAGATCATTGTGTCTCTCTGTAATTTATACTGGTACACTGTTCCCGCCCTTAGCTGATCTGTGAACAGCTTTTGACCTAGTTTTCATAAGTTTCGCTTTCT
>TU96068
TATATATATATAGCATTGGTACGTTTTTTTTCTGGTTGGTTCTTCACTTTGTAGACTTTGTAGACTTGAGGCTTTACGCAAGATGTCAGGCATCGCAGCTTTTAGGCATACGGTACTGGCTTCTGCGCATCTGGACACCAACGCAAAACAGAGGTGGAGACTGAGGTTCCCCTCTGAATAGTGCTGGGCCAGATGATCCCGCCCCTGGCAGCAAGGATTTACATGAACTCCGCCTCCTTCATGACATTAGTGCTACGAGATCGCTCAGGGTTCCATGGCGTCTCCCACAGAGGGCCCACCATAGACCTGTTAAAATGATTTAGTTTCCAGGTTACACGGTGACAAACCACAAAAATAAAATTTGCATTACAAAATCATTCAATTATGATGATAGAAAACACTTACAACACAATTTTCTAAATAATAATCATAATAAGTAATAATAATAACACTTGTGAGTAATAATGATTATCTCTTACCCTGTTGATCTGTAAGCAGGAGGCTCTGATGGTACACAGCAAAACATCCAGTGTTAAATTAACACTTCCAGTGTCACCCGGTGTTTATATAATCCGGTGTGGATTATATAAACACTGGCAATGTTAATTTAACACTAACAGTGTTCATTTAACACTGGAGGTTTTACTGTGTAGAAAGGACAGATCATTGTGTCTCTCTGTTATTTATACTGGTACACTGTTCCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96065 False 730 lncRNA 0.41 2 11290283 11291186
TU96066 False 531 lncRNA 0.45 3 11290283 11291186
TU96067 False 586 lncRNA 0.45 4 11290283 11303625
TU96068 True 705 lncRNA 0.40 2 11290283 11291186

Neighbor

gene id symbol gene type direction distance location
CI01000013_11271292_11274155 NA coding upstream 15529 11270606 ~ 11274754 (+)
CI01000013_11224779_11252341 SHANK3A, SHANK3 coding upstream 37279 11224698 ~ 11253004 (+)
CI01000013_11063977_11172626 NA coding upstream 117649 11063977 ~ 11172634 (+)
CI01000013_10916049_11031034 NA coding upstream 259124 10913695 ~ 11031159 (+)
CI01000013_10865753_10884937 MAPK8IP2 coding upstream 403982 10865753 ~ 10886301 (+)
CI01000013_11326503_11335221 NA coding downstream 22878 11326503 ~ 11335514 (+)
CI01000013_11365641_11366348 NA coding downstream 61560 11365185 ~ 11366708 (+)
CI01000013_11384868_11387085 PDP2 coding downstream 81243 11384868 ~ 11387402 (+)
CI01000013_11389357_11391382 NA coding downstream 85732 11389357 ~ 11391382 (+)
CI01000013_11392513_11399953 NA coding downstream 88888 11392513 ~ 11400050 (+)
G84493 NA non-coding upstream 3429 11286551 ~ 11286854 (+)
G84492 NA non-coding upstream 5626 11284303 ~ 11284657 (+)
G84425 NA non-coding upstream 33819 11253612 ~ 11256464 (+)
G84486 NA non-coding upstream 152062 11137893 ~ 11138221 (+)
G84437 NA non-coding upstream 161333 11127578 ~ 11128950 (+)
G84494 NA non-coding downstream 8744 11312369 ~ 11312662 (+)
G84421 NA non-coding downstream 17204 11320829 ~ 11322083 (+)
G84500 NA non-coding downstream 33720 11337345 ~ 11337554 (+)
G84510 NA non-coding downstream 57983 11361608 ~ 11361824 (+)
G84541 NA non-coding downstream 77046 11380671 ~ 11380906 (+)
CI01000013_10756927_10790192 FRMD4A other upstream 505526 10756927 ~ 10792761 (+)
G84250 NA other upstream 1074321 10215127 ~ 10215962 (+)
G84215 NA other upstream 1210947 10076454 ~ 10079336 (+)
G84194 NA other upstream 1253490 10030608 ~ 10036953 (+)
G84005 NA other upstream 1688048 9601611 ~ 9602235 (+)
G84768 NA other downstream 866364 12169989 ~ 12170818 (+)
G84790 NA other downstream 881317 12184942 ~ 12201975 (+)
G84864 NA other downstream 1061424 12365049 ~ 12375905 (+)

Expression


Co-expression Network