Gene
RNA
| Item | Value |
|---|---|
| gene id | G84421 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 11320829 ~ 11322083 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU96076 | True | 1231 | lncRNA | 0.40 | 2 | 11320829 | 11322083 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_11287928_11292308 | NA | coding | upstream | 28422 | 11287928 ~ 11293107 (+) |
| CI01000013_11271292_11274155 | NA | coding | upstream | 46075 | 11270606 ~ 11274754 (+) |
| CI01000013_11224779_11252341 | SHANK3A, SHANK3 | coding | upstream | 67825 | 11224698 ~ 11253004 (+) |
| CI01000013_11063977_11172626 | NA | coding | upstream | 148195 | 11063977 ~ 11172634 (+) |
| CI01000013_10916049_11031034 | NA | coding | upstream | 289670 | 10913695 ~ 11031159 (+) |
| CI01000013_11326503_11335221 | NA | coding | downstream | 4420 | 11326503 ~ 11335514 (+) |
| CI01000013_11365641_11366348 | NA | coding | downstream | 43102 | 11365185 ~ 11366708 (+) |
| CI01000013_11384868_11387085 | PDP2 | coding | downstream | 62785 | 11384868 ~ 11387402 (+) |
| CI01000013_11389357_11391382 | NA | coding | downstream | 67274 | 11389357 ~ 11391382 (+) |
| CI01000013_11392513_11399953 | NA | coding | downstream | 70430 | 11392513 ~ 11400050 (+) |
| G84494 | NA | non-coding | upstream | 8167 | 11312369 ~ 11312662 (+) |
| G84417 | NA | non-coding | upstream | 17204 | 11290283 ~ 11303625 (+) |
| G84420 | NA | non-coding | upstream | 19746 | 11299000 ~ 11301083 (+) |
| G84493 | NA | non-coding | upstream | 33975 | 11286551 ~ 11286854 (+) |
| G84500 | NA | non-coding | downstream | 15262 | 11337345 ~ 11337554 (+) |
| G84510 | NA | non-coding | downstream | 39525 | 11361608 ~ 11361824 (+) |
| G84541 | NA | non-coding | downstream | 58588 | 11380671 ~ 11380906 (+) |
| G84544 | NA | non-coding | downstream | 60982 | 11383065 ~ 11383274 (+) |
| G84550 | NA | non-coding | downstream | 83513 | 11405596 ~ 11405888 (+) |
| CI01000013_10756927_10790192 | FRMD4A | other | upstream | 536072 | 10756927 ~ 10792761 (+) |
| G84250 | NA | other | upstream | 1104867 | 10215127 ~ 10215962 (+) |
| G84215 | NA | other | upstream | 1241493 | 10076454 ~ 10079336 (+) |
| G84194 | NA | other | upstream | 1284036 | 10030608 ~ 10036953 (+) |
| G84005 | NA | other | upstream | 1718594 | 9601611 ~ 9602235 (+) |
| G84768 | NA | other | downstream | 847906 | 12169989 ~ 12170818 (+) |
| G84790 | NA | other | downstream | 862859 | 12184942 ~ 12201975 (+) |
| G84864 | NA | other | downstream | 1042966 | 12365049 ~ 12375905 (+) |
