Gene
RNA
| Item | Value |
|---|---|
| gene id | G78997 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 1955434 ~ 1955667 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU89999 | True | 234 | lncRNA | 0.46 | 1 | 1955434 | 1955667 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_01789191_01802356 | NA | coding | downstream | 152676 | 1789173 ~ 1802758 (-) |
| CI01000013_01685711_01689064 | NA | coding | downstream | 266040 | 1685643 ~ 1689394 (-) |
| CI01000013_01639151_01640992 | LYSMD4 | coding | downstream | 314442 | 1638986 ~ 1640992 (-) |
| CI01000013_01628415_01628978 | NA | coding | downstream | 326407 | 1628016 ~ 1629027 (-) |
| CI01000013_01542316_01542809 | NA | coding | downstream | 412523 | 1542125 ~ 1542911 (-) |
| CI01000013_02009256_02029638 | NA | coding | upstream | 53584 | 2009251 ~ 2029797 (-) |
| CI01000013_02144531_02157776 | NA | coding | upstream | 188317 | 2143984 ~ 2158007 (-) |
| CI01000013_02295361_02314298 | MCTP2A | coding | upstream | 339121 | 2294788 ~ 2314812 (-) |
| CI01000013_02321895_02371964 | MEF2A, MEF2AA | coding | upstream | 366228 | 2321895 ~ 2371964 (-) |
| CI01000013_02483356_02484395 | NA | coding | upstream | 527103 | 2482770 ~ 2484395 (-) |
| G78891 | NA | non-coding | downstream | 176348 | 1778721 ~ 1779086 (-) |
| G78886 | NA | non-coding | downstream | 182980 | 1772252 ~ 1772454 (-) |
| G78851 | NA | non-coding | downstream | 263147 | 1692078 ~ 1692287 (-) |
| G78841 | NA | non-coding | downstream | 305049 | 1650097 ~ 1650385 (-) |
| G78840 | NA | non-coding | downstream | 311342 | 1643831 ~ 1644092 (-) |
| G78974 | NA | non-coding | upstream | 24885 | 1980552 ~ 1986923 (-) |
| G78978 | NA | non-coding | upstream | 45863 | 2001530 ~ 2002778 (-) |
| G78999 | NA | non-coding | upstream | 47651 | 2003318 ~ 2003606 (-) |
| G79001 | NA | non-coding | upstream | 50727 | 2006394 ~ 2006716 (-) |
| G79002 | NA | non-coding | upstream | 51232 | 2006899 ~ 2007142 (-) |
| G78296 | NA | other | downstream | 1928537 | 26528 ~ 26897 (-) |
| G79690 | NA | other | upstream | 857580 | 2813247 ~ 2815392 (-) |
| G80262 | NA | other | upstream | 1609504 | 3565171 ~ 3567537 (-) |
| G80271 | NA | other | upstream | 1763766 | 3719433 ~ 3723607 (-) |
| G80399 | NA | other | upstream | 1948400 | 3904067 ~ 3906240 (-) |
| G80443 | NA | other | upstream | 2109275 | 4064942 ~ 4066017 (-) |
