G80607


Basic Information

Item Value
gene id G80607
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4416261 ~ 4444625 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU91774
ACCAGGCTCTTCCTATTTTTGCTGTATAATTTTTCAAATTGGTATTGAAAGATTCTGTATCTTTATAGATATTTATATATATAATATATAAGCCAAAGTGCATTTCCCGTTTTTTCCTCTTGTCCATGTACACATTGCACCATACATAAATAATTACATCGTAAAAATGACTCCAGTATTTACAAGTATAATATATATTTCATATAATATATAAAACTTTATATTAAATCTAAGTAGATGATATTTGGGATAGTTTGTGGAGTCCAAAAGTCTCTCAACACAATCAAGTCCATGTGTGTATGTGTTATCTGTGGTTGTTGAGGAGGATCTCGAGCCAGCACGGGCAGGAAGTGATGAACTGACGGGAGTAACAAGGGCCCCAGCCCTTCGCAAAGCTGATGCGCACACTGTTCGGGTCATACGGTCCATCTAGCAGCTCGGATTCGGCCCCCTGCCTGAGCATGGATGAGCGTTCGTAGTCGAACACTTTGATGGAGTAACCAGGCATCACCTTGCGCACCACCAAGCTACGGCTCCCCGGTACGTCCAGGGTAGGCGAGTTGACAAATATGGGGTGCTGGCTGCGGTTGTAGGCCCAGACTCCGTCCGGCTCTTTGCTGAGGAGCAAGCCGTATCCGATCTTGCCGCGCGTCCGTTGCACGGTGCTGCTGCGCTGGTCCAGGCTCAGCTGGCCGAGGCAGAAACCCGTGCCTTGAGGTAGGTCATAGAAAATGCTGACAGCTGGCTGGTACACCGTATAGAGGCGGCCCACCCGCGTTCGATGCTCCCAGTACGCCACGTTACACCAATGACTCTGCTTGGGGGCATCAGGTGACAGACTGGCATCTGAGAATTCCCCTTGGGTGACGTTAGGCGAGCTGGCAGCCTCCGTTTCAGTGTAAGACAGTGTGGAATCTGACAGATCCAGTGGCTTGTGTTCTTCGCTGGGGGAAAGTCTTGAGTATGGAGGAGGGGGTGACTCTGGCCCACAGAGCCGGCTGTAATGATATGGATTGCAGCACACTACCGGACCGTCCTGAGCTCCGAAGCTCTTGCACTCACAGAGCGCTTTAAGCTGGGCCGTGTGCTGCAGGTCTGACCACCGATAAAGCTTACAGATGAGCAGCTGTGGAGGAGCCATGTGGCCGCCTAACCGCAGCTCGGTCCGCGATACCATCACGCAGTCGCTCGGCATCCCTCCTTTGGACTCCACGGCTTCCAACAAAGTATCCAAGGTTTTCTCCTTTAGCCTTTTTAATAGCGAATAGGTGGCGGTCTTGAGCTCCTGCTCCATGACGGAGCGAGGTTTCGTCTCCTGGCTCTCAAGTGGACCGGGGTCCCGAGAAGAACCAATGTTCCTCAGCACGAACTGGCACGAGCCAGGCTCCGGGCTTCTAGATCCAGAATGATGGTCCCGATCTTTAAATAAACAGCAAGTGACTGTTCTACAATCGCTGTCCTGCACAGACCGAGGGCTTCCCACCGTACACACCGTACCCCCATCTTGGTCCAAAACGCCCCCTGAGGTGCCACCACCACCACCACTGCCGCTGCTCTCAGTGGGATTCCTCGTACACACTTCCCCATAGTCCACGCCAGGCGACCCGCTCGGGGTCATCGGTCTGAACTCCGTCTTGGGAATTTTCTCTGGGTTGGTGCCAAGCAGATCGTCTCGAGACCCCTCGCCGCTTTTGCCATATCCATCGCCCCCCTCTTTATCTGGAATCAAACGGCTTCTCCAGAGTCGCCGCACAAGACCTGAGCGTTTCGTCCTGAACATACGACAACTTGAAACTCTAGATGAGTTATTTACGTTCAGATCGTAGCGATTTAAAACTATTTCTGAGCTCGTGCAACATTAATGTTGGCCGAATGCCGTGCAGCGCGTGCACAGCCGAGCACCATATATTGGTGGCAAAACCACAACATTAGTTTTGAAGGCACAATGTTATATTGCATTAAAAACAGAAAACGTCAAACAACCGCAAGGCTACACAGAAACGCATTCATCTTAGAAGAACGCTGTCAGTAGCCTACATGTGAAGAACGTTTGGAAAGTTTTTAGATTTTAAACGCACTACGGGTTTTAACTACATCAAATACATTTGTTGTAAAACAAACAAACAAACAAAACAAAAAAAACACGCGAAAAGCTACACTGGTCGCGCGCTCTCAAATGTTTTCGGACTTTGAAACACGTTCAAATCCACTCTTCAACAGCGGGTCTGGTGACATGAATGAAGCTGCTCCTCGGCGAATTAAATCCACAGACAATTCCTCACAGAATTCACTATTCCGGTTGTTTTCCACTATTCCAGCGCACTCTATTTTGCGATCCAAAAATATCCTTGTGTGCGCGCGCCGGGGCCAGAAAAGGAACAATCCGTGGACTTATAGTGTGCTTCTGGTTCCGTGTTCAGACCTGGTCAAACTGCAACCCAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU91774 True 2443 lncRNA 0.50 4 4416261 4444625

Neighbor

gene id symbol gene type direction distance location
CI01000013_04344339_04347938 AAGAB coding upstream 68178 4344339 ~ 4348083 (+)
CI01000013_04316134_04317091 NA coding upstream 99063 4316134 ~ 4317198 (+)
CI01000013_04084679_04088148 NA coding upstream 326639 4083814 ~ 4090171 (+)
CI01000013_04051081_04064651 NA coding upstream 351092 4050837 ~ 4065829 (+)
CI01000013_03952621_03964132 KIF23 coding upstream 452027 3952621 ~ 3964234 (+)
CI01000013_04505188_04527744 NA coding downstream 60520 4505145 ~ 4527872 (+)
CI01000013_04542059_04550082 LCTLB, LCTL coding downstream 97434 4542059 ~ 4550307 (+)
CI01000013_04612468_04618550 NA coding downstream 167429 4612054 ~ 4619000 (+)
CI01000013_04657029_04672057 MEGF11 coding downstream 212178 4656803 ~ 4672742 (+)
CI01000013_04673313_04707104 MEGF11 coding downstream 228591 4673216 ~ 4707470 (+)
G80616 NA non-coding upstream 2957 4413097 ~ 4413304 (+)
G80614 NA non-coding upstream 3753 4412294 ~ 4412508 (+)
G80512 NA non-coding upstream 192227 4223453 ~ 4224034 (+)
G80529 NA non-coding upstream 197230 4218648 ~ 4219031 (+)
G80506 NA non-coding upstream 209550 4206137 ~ 4206711 (+)
G80775 NA non-coding downstream 18130 4462755 ~ 4463021 (+)
G80812 NA non-coding downstream 72530 4517155 ~ 4517368 (+)
G80814 NA non-coding downstream 76583 4521208 ~ 4521446 (+)
G80815 NA non-coding downstream 77793 4522418 ~ 4522651 (+)
G80817 NA non-coding downstream 80752 4525377 ~ 4525649 (+)
G80062 NA other upstream 831477 3584008 ~ 3584784 (+)
G79309 NA other upstream 1949090 2466765 ~ 2467171 (+)
G77695 NA other upstream 3463292 946521 ~ 952969 (+)
G77533 NA other upstream 3706712 708833 ~ 709549 (+)
G80845 NA other downstream 390453 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 1611673 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 1633937 6075400 ~ 6081684 (+)
G81994 NA other downstream 2891320 7335945 ~ 7338239 (+)
G82168 NA other downstream 3583713 8028338 ~ 8041343 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012760 smad6b coding NC_007129.7 CM002902.2 19648275 ~ 19699061 (+)
bowfin (Amia calva) AMCG00007434 NA coding CM030123.1 CM030123.1 18496190 ~ 18503391 (-)