serp1


Basic Information

Item Value
gene id serp1
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1827904 ~ 1832674 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU424653
TTCTTAATGCATACGTAGACATCTCTGGAGTACGTCGACGGATCAGCGGTGAAGCGGCtgcattttcctttaaaaaccGACGCAAACGGCGTTTAAACTCCAGATTTCTCGTCGTTAAACCGATAAAGACAAGACAGAAAATATGGTGGCTAAGCAGAGGATACGTATGGCGAACGAGAAGCACAGCAAAAACATCACACAGCGGGGGAATGTGGCCAAATCATCAAGAGGGCCACAAGACGAGAAGGCTGCAGTAGGGCCTTGGCTCTTGGCACTATTCGTCTTTGTAGTGTGTGGATCAGCTATTTTCCAGATCATTCAGAGCATCAGGATGGGGATGTAAGGAGACATCTGGATCATCTCTCAAcattcctctcttctctctctctctctccccacaaaGCAGACAGTCTTGTCTCCATTCCTCTCGTCTTATTTAACATGTACATTTCCATCGCCACAAGATTCAGATCTCTGTGCCTTACACGAACTGTGGAGGAATGAAAAATGTCAAAGAAAACGTTTCCGAAAACAAAGCCATGAATTTACAGAACATTCCAGTTTGGGAGTTTCCTGGATCAGACCGCAAAACCTTTCTGTCAGAAGCTGAAATGATTCCTCATCTTTATCTTCcttttccctttataaaggacTATTTGATGACCATACGTTGTGTCTAAGTGTCTGTATCTGTACATGACAATGTTTAGGTGCCAAAATAGAAGATGTTTCTGTTTAGGTCATATTAACTTAACTACAGAACGTTTCTCTCGAACCAGTGGAAAATTATTCAGTAGGGTGTTTGAATCTATACATATTCCATGTTTCTCTGTCCCATTTGTAATGGTGTACATTCTTAGACCTGTATTGTTGTTTGAAGGAAATTAAGTCCTTTAGGATGATTTTTGTCTATTGGTCATTTGCGAAATATGTACCTTTTGCTTTCCGTTTGAATGtcctttaacaaataaaatgttaaaacctGG
>XM_007257764.3
AGCTGGGCGGGGTTTTCTTAATGCATACGTAGACATCTCTGGAGTACGTCGACGGATCAGCGGTGAAGCGGCtgcattttcctttaaaaaccGACGCAAACGGCGTTTAAACTCCAGATTTCTCGTCGTTAAACCGATAAAGACAAGACAGAAAATATGGTGGCTAAGCAGAGGATACGTATGGCGAACGAGAAGCACAGCAAAAACATCACACAGCGGGGGAATGTGGCCAAATCATCAAGAGGGCCACAAGACGAGAAGGCTGCAGTAGGGCCTTGGCTCTTGGCACTATTCGTCTTTGTAGTGTGTGGATCAGCTATTTTCCAGATCATTCAGAGCATCAGGATGGGGATGTAAGGAGACATCTGGATCATCTCTCAAcattcctctcttctctctctctctctccccacaaaGCAGACAGTCTTGTCTCCATTCCTCTCGTCTTATTTAACATGTACATTTCCATCGCCACAAGATTCAGATCTCTGTGCCTTACACGAACTGTGGAGGAATGAAAAATGTCAAAGAAAACGTTTCCGAAAACAAAGCCATGAATTTACAGAACATTCCAGTTTGGGAGTTTCCTGGATCAGACCGCAAAACCTTTCTGTCAGAAGCTGAAATGATTCCTCATCTTTATCTTCcttttccctttataaaggacTATTTGATGACCATACGTTGTGTCTAAGTGTCTGTATCTGTACATGACAATGTTTAGGTGCCAAAATAGAAGATGTTTCTGTTTAGGTCATATTAACTTAACTACAGAACGTTTCTCTCGAACCAGTGGAAAATTATTCAGTAGGGTGTTTGAATCTATACATATTCCATGTTTCTCTGTCCCATTTGTAATGGTGTACATTCTTAGACCTGTATTGTTGTTTGAAGGAAATTAAGTCCTTTAGGATGATTTTTGTCTATTGGTCATTTGCGAAATATGTACCTTTTGCTTTCCGTTTGAATGtcctttaacaaataaaatgttaaaacctGG

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424653 False 986 lncRNA 0.41 3 1827918 1832674
XM_007257764.3 True 1000 mRNA 0.41 3 1827904 1832674

Neighbor

gene id symbol gene type direction distance location
LOC103029868 NA coding upstream 37028 1787316 ~ 1790876 (+)
omp omp,ompa,LOC107660685,LOC107735103 coding upstream 77661 1745320 ~ 1750243 (+)
LOC103038299 gdpd4a,LOC108431176,LOC108264809,LOC107735911,LOC107660699 coding upstream 193695 1585462 ~ 1634209 (+)
pak1 pak1 coding upstream 263440 1461963 ~ 1564464 (+)
clns1a clns1a coding upstream 379174 1440770 ~ 1448730 (+)
LOC103031553 pcyt1a,LOC108440592,LOC108264716,LOC107091881 coding downstream 2003 1834677 ~ 1847584 (+)
cstf3 cstf3,LOC107671440 coding downstream 243927 2076601 ~ 2112984 (+)
eif3m eif3m,LOC107602127,LOC107671036 coding downstream 389295 2221969 ~ 2236883 (+)
pex16 pex16,LOC107753012,LOC107669959,LOC106593118 coding downstream 1161394 2994068 ~ 3009972 (+)
LOC103038331 LOC108433450 coding downstream 1186485 3019159 ~ 3035820 (+)
G308457 NA non-coding upstream 4309 1789538 ~ 1823595 (+)
G308465 NA non-coding upstream 8803 1817060 ~ 1819101 (+)
G308459 dcun1d5,LOC107712802 non-coding upstream 21067 1796858 ~ 1806837 (+)
G308453 NA non-coding upstream 43151 1771904 ~ 1784753 (+)
G308448 capn5,LOC108264643,LOC106535735,LOC107713096,LOC107665347 non-coding upstream 86880 1737440 ~ 1741024 (+)
G308470 NA non-coding downstream 21967 1854641 ~ 1910645 (+)
G308474 NA non-coding downstream 30224 1862898 ~ 1934118 (+)
G308501 rnpepl1 non-coding downstream 164559 1997233 ~ 1998747 (+)
G308521 NA non-coding downstream 254434 2087108 ~ 2088169 (+)
G308552 NA non-coding downstream 362317 2194991 ~ 2195304 (+)
G308090 NA other upstream 1641829 185337 ~ 186075 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other downstream 184790 2017464 ~ 2020131 (+)
G308535 depdc7,LOC107758055,LOC107576633 other downstream 298405 2131079 ~ 2143963 (+)
G308643 kifc3 other downstream 487217 2319891 ~ 2338166 (+)
G308680 NA other downstream 723653 2556327 ~ 2556569 (+)

Expression


Co-expression Network