LOC103036410 (fchsd2,LOC107705784,LOC107594367,LOC107600282)


Basic Information

Item Value
gene id LOC103036410
gene name fchsd2,LOC107705784,LOC107594367,LOC107600282
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1179557 ~ 1333842 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665979.1
tctctttctctctttttttctctctctctctctctttatttcccaGCCGCAGTGTTCGCCTGGCTCCGGGGCTTCAGCACAGCGGAGCTGCGTTGTTGTGATGGCCGCCTGAGCCGCGCTCTGCTCCGGGTCTCGTCATCCCCGCGCCCCGCTGGCCGCTGGTGGTGTtctggaggagaaggaggagaagaagagctTTCTTTTggatttatttctattttccaCATGCATGTCCATGTTCAAACATGCAGCCTCCGCCGAGAAAGgtaaAAGTAACGCAGGAGCTGAAGACCACTCACACAGAGCAGCTCACCCGActgcaccttaaacaccagacCGAATGTGATTTACTGGAAGACATGAGGACATACAGCCAGAAGAAGGCTGCGCTGGAGAGAGACTACGCACAGGCTCTGCAGAAACTGGCCAATCAGTATCTGAAGAGGGACTGGCCTGGAATCAAACCGGACGACCAGCGGACCGACTATCGGAATGTGTATGGTGTGTGGAGGGCGTATCTGGAGGGCACAGTGCAGGTGACGCAGTCACGGCTGTTTGTCAGTGAAAACTACAAGAACGAGATCTCCGACCCCGCCAAGACCGTACGGCTTTACAAagagcagcagctcaaaaagTGCATCGAGCAGCTGGGCCGGATCCAGGCCGAACTGCAGGACTCGGTGAAGGACCTGGCCAAGTCCAAGAAGAAGTACTTTGAGCTGGAGCAAATTGCCCAGGCCGTCCGAGAGAAGGCCGACATCGAAGCCAAGTCGAAGCTGGGGCTCTTCCAGTCCAGGATTAGTTTACAGAAGGCCAGCGTCAAGttgAAAGCTAAGAGGAGTGACTGTAACTCTAAAGCTACTCACGCCCGGAACGAGTACCTGCTCACCCTCGCCGCCGCCAACGCACACCACGACCGCTACTACCAGACCGACCTGGCCAACTGCATCAAGgcgcTGGATGGTAATGTGTATGATCACGTGAAAGATTACTTGATGTCGTTCTGCCGGACAGAGCTGGAAGCGGTCCAGGCCGTCCACAATACGTTCCAGTTTCTTCTGGAGAAGTCCAGCCGAGTGGTGCAGGACTTTAATCAGCAGCTCTTCCTGCAGGAGAATCCAGTTTTCCACAAAGCACAAGACTTCCAGTTTCAGCCTTGTGACAGTGACGCGagtCGGCAGCTGGAGTCAGAAACAGGCACCACAGAGGAGCACAGTCTGAATAAGGAGGCGAGGAGATGGGCGACCCGTGTGGCCCGCGAGCACAAAAACATCATCCACTATAAAAGGgtcagtctcacacacacacacacacacacacacaccacactgtcCACTACATTACaacaacatacatacataaattactTCTATTATAAATTGTCTACGGTGAAGCTGAAGGCAGAAGCTCGTCTGGATCTGCTGCGGCAGGTGGGCGTGTCCGTGGATACGTGGCTGAAGAGTGCCATGAACCAGGTGATGGAGGAGCTGGAGAACGAACGCTGGGCATCCCTGCCCTCCCTCACTACCCATGATCCTTCACTCTCAACCGTGGTGGACTTGGAccgagaagaaggagaagattTGGAGGAAAACATGGAGGCGTTTGATGACAGCAGCTCCAGCCCTTCAGGAACCCTGAGGAACTACCCGCTCACCTGCAAGGTGCTCTACTCCTACAAGgcGTCTCAGCCTGATGAGCTGACAATTGATGAACATGAGATGCTGGAGGTCATTGAGGATGGAGACATGGAGGACTGGGTCAAGGCACGGAATAAAACAGGCCATGTTGGCTATGTGCCAGAGAAGTACCTGCAGTTCCCCACCTCCAACAGCCTGCTGAGCATGCTCCAGTCCCTGGCCGCTCTGGACACTCGCTCGCACACTTCCAGCAACTCCACGGAGCCTGAGCTGGCCTCAGGCAGCATCAACGGAGACGCCAGCAtgaacTTTGTGAAGGCGATATATGACTATGAGGGACAAACGGATGACGAGTTATCTTTCCCGGAGGGCGCGGTCATCCGGATCCTCAATAAGGACAATCAGGAGGACGATGGATTCTGGGAGGGGGAGTTCAATGGTCGTGTGGGCGTCTTTCCATCTGTACTGGTGGAGGATCTGACTGCAGAGAATGGTGACATACACTGGGTCCCCGATGCTCAGGTATCATCGTGTCCCAGGTTAACATCATCTTTGCCCCCGTTACCCCTGTATGAACAGCCCCCCTGCAGCCCCTATACCAGCCCAGACGCCGTCTCCGCCCCCGCACTGCCCCGCTCGCCCTCCGCCCTCAACGGAGATCACAAACTGCCCGGCCTGCAGAAAGCACCTCCCCACAGTAAGAAACCAGATCACAGCTCCAGTCTGAGTCCAGAGAGTCCAGGCTTCTCCCAGCCGCCCAGATTCACTCCGGACGCATCCGGCCCAGGCAAACTACGACCTGTTCGAGCAGCTCCGCCTCCCCCAAAGCAGCACCCTCGCCGGCAGGTGGAGAAGACGGAGGAAGTGGAGATCACGCTGGTGTAACGGCGCCGCCCTGCAGTCTGGAGGACTCATTTGCACCTGACCTCAAACTCCTCCCACTGGTATCAGAGGGTCGGGGTTATTGTAAACCACACCCCTGTTCACTCTGATAGGAGGAGGATTGCATCTCAAAGCCCTGCCCCttaccttcttttttttcttgtctggAGAAACACCTCTTCTGGCGTCATGGATTACTTGGTGCCTTTAACCCTTTTCATGCCAAATCCAACCCAGTCCTTGTATTTGTAACTGTTCGCTGCTTCAGACGCAGGTTTCGGTCTTGGTCATGAACCGTTACTGGGGTTACTGGGACGAGTCGAGTCTGCGCCCACAGAACGACCACAAGCAGCCAATCCCGAGGCTTCGACCTGTTACTGGAGGTTACCAGAGTGTTTCCTGTACAAATGCAAGACGGCGGACAAGGATGTGTAAAGCATtgtaaggctacgttcacacagcaggagAAAATGGCCTAAATCAGTTTATCTCTTCAAAATTAGGCTGTCCACACTATGTTTTAAATGCTCCTaaacttcacatgaagtttcagtttcatccttACCAGAATCAGAGTAGCTATTAAGGAGACCTAGTGGCTGCAGCTCAGCTTATCACAAAGAATAATTGAAGCTCACTGTAAAAAAGGCCTATAATTCAGCCACACCcactttttatttgttgatttaAAGTTTGTTAAgctttgcattttattttcctttgtcGCTTGCTACAGCAGCGCCCCCTGTGGCCACATTTGACCATTACTTTAGGAACACAGTGGTTGTGACACACTGCTGTTATCCATTTTTACATCTCATACCTGCCTAGTGACGTACTTCCGATTTGGCTGTTCAAATTAGGGCTATATATTTGCAAGAACCTGGTGATACCATATATAGTGCGACACAGCAGTCAAAATTCAGTATtattaataagttaataattataaatatgtcAATACTGTTAGCAAGGCAATATATTGACTTTTTTGCAGGGAGgcaaaagtataaaatataaaaaaacaccccaTCATATACCTATAATGTgtgctgagtaaaaaaaaaaactttttatcagAACAAtcagattgaaaaaaaaagagaaagtaatACAatactgccctctagtggtcaaggtttaaacacaacacaaaatgagcCACTGTCTACCACCAATCTttgcatttaatataataattaaaaaatagtagATTAAAATAGTAGTAGCAATTGAAGTAGCCCACGTTCTAATTATAAAAACctatttaaatcagttttattgtgttttcgCTGTTCACACTGCCTTACGAATGACAAATTTCCGTCACATATGatgaaaaatattgaattttgtCCACTTTTACCCGCTGTGTGAATGCAGCCTCAATGTAAAAGAGGCTTTACTTGCACATATACATATCAAGCAGGCTATACAATAGCAGAAATGCAATAGCAGGAGGTGTCAGGGGGCACGTTTTGTGTTTTGGGGTATTTGAATGGGGTATTGAGTGTACAGGGGGCTGATTGTAGTGGGTGTGGGTGAGCGAGATCGCCCTGGCTTCAGCCACGATGTAGTCCTACCGTAcgtatttaatgtgtattagtacagtacattacTGTTGTCATAGGAATGTTCAGAAATATGTGCAGCATTTCCTCATATAACGTGACTGAGTGGAGGCTTTTTTGGAATGTCATAGGATGCCACAGTGTTGACatgttaaagcagcagtccctagattttctcttttaaattgaaagcagtagtattgCTGAGTTGGGAGGGGACAGAATATTATAACTAGTGGTATCAGTGTCCTGATCCGAAAAAAACACCCCTGGAAAGTCTAATATAATCATTCTAAAACAGTGGTCTGGTACCGGTGGTCTGGTAGGTTGGTTGGATATAATTGCTAAATAATTGATCTACATTTTGGacagtatttaataatataaaacgattaataaacaatataaacgggaaaaaaggaaatacagAATTTCACACAGCAAATAATTTAACTCTTCCACTTGTGCAATtgcacattctcaccagagaggtctccaaatccccaaCTGCCTCAAACTTACGGACTGTGGCTTTAATGAGAAAGGAAACTGCCCAGATAACATGcccaataaaaagaaagagagagagattcgctGAAAGGACAATTTTAAGGTATAAaagtggtaagcaccagatactattAAGTGAGAACCAGATATTGTAAGTAATGGTAATGGTATAGTTATGGTAAGTGAGCACtggatactatgtggtgagcataATACTGTATCTAGATGCTATCCAGATACTTTTAAGTGAGCACCAAATACAACGTGTTAAGCACCACATACTATTAAGTGAGAGCCATATATTATCGGATGAGCACCAGATATTATCAGATGATAATCTAATAAGCTATCTGGTGGGATCCAGATATTTTCAG

Function

symbol description
fchsd2 Enables phosphatidylinositol-3,4,5-trisphosphate binding activity and phosphatidylinositol-3,4-bisphosphate binding activity. Involved in clathrin-dependent endocytosis and positive regulation of Arp2/3 complex-mediated actin nucleation. Located in plasma membrane. Colocalizes with clathrin-coated pit.

NR:

description
PREDICTED: F-BAR and double SH3 domains protein 2 isoform X2

GO: NA

KEGG:

id description
K20125 FCHSD; F-BAR and double SH3 domains protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665979.1 True 4977 mRNA 0.47 19 1179557 1333842

Neighbor

gene id symbol gene type direction distance location
relt relt coding upstream 24268 1084433 ~ 1155289 (+)
arhgef17 si:ch211-248g20.5,arhgef17,LOC107660677,LOC107658857 coding upstream 107034 894860 ~ 1072523 (+)
p2ry6 p2ry6,LOC107705774,LOC107601092,LOC107660676,LOC107735228 coding upstream 292266 859048 ~ 887291 (+)
fam168a fam168a,LOC107600264,LOC107594362,LOC108264593,LOC107705757 coding upstream 337870 783475 ~ 841687 (+)
LOC103036707 NA coding downstream 6625 1340467 ~ 1352751 (+)
rps3 rps3,LOC102795110 coding downstream 19920 1353762 ~ 1361925 (+)
kctd14 kctd14 coding downstream 29872 1363714 ~ 1366089 (+)
ints4 ints4 coding downstream 43764 1377606 ~ 1401271 (+)
rsf1 rsf1,LOC102310057 coding downstream 82500 1416342 ~ 1434932 (+)
G308192 NA non-coding upstream 18822 1103759 ~ 1160735 (+)
G308190 NA non-coding upstream 20291 1129540 ~ 1159266 (+)
G308185 NA non-coding upstream 53217 1074301 ~ 1126340 (+)
G308228 NA non-coding upstream 73404 1105095 ~ 1106153 (+)
G308223 NA non-coding upstream 165330 1012427 ~ 1014227 (+)
G308324 NA non-coding downstream 3546 1337388 ~ 1338341 (+)
G308388 NA non-coding downstream 105416 1439258 ~ 1439566 (+)
G308441 NA non-coding downstream 297317 1631159 ~ 1632002 (+)
G308444 NA non-coding downstream 309992 1643834 ~ 1645171 (+)
G308448 capn5,LOC108264643,LOC106535735,LOC107713096,LOC107665347 non-coding downstream 403598 1737440 ~ 1741024 (+)
G308090 NA other upstream 993482 185337 ~ 186075 (+)
serp1 NA other downstream 494062 1827904 ~ 1832674 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other downstream 683622 2017464 ~ 2020131 (+)
G308535 depdc7,LOC107758055,LOC107576633 other downstream 797237 2131079 ~ 2143963 (+)
G308643 kifc3 other downstream 986049 2319891 ~ 2338166 (+)
G308680 NA other downstream 1222485 2556327 ~ 2556569 (+)

Expression


Co-expression Network