cstf3 (cstf3,LOC107671440)


Basic Information

Item Value
gene id cstf3
gene name cstf3,LOC107671440
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 2076601 ~ 2112984 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665980.1
GCGTCCGGTGAGAGCGGGGGTGAGGGAGCTCGCCATTTTAGGAGCCTGTGAGGATCTGCAGGCTGGAAATCTTACAAATAATAAACGCTGCAGGTTAATAATGTCCGCAGAAAGCGCCCCGGACCAGgCTGCGGAATACATCCCGGAAAAGGTgaaaaaggcagagaagaagttGGAAGAAAACCCGTATGACCTCGACGCGTGGAGCATACTGATTCGAGAAGCACAGAACCAACCTATAGACAAAGCAAGGAAGACTTACGAAAGACTTGTCGCCCAGTTCCCCAGCTCGGGCAGATTCTGGAAACTATACATTGAAGCTGAGGTTAAATTccattttctatttctattcctTTCATGTGTGCAAGAGTATGTCTCCCAATTGGATCAACAATGTGacattcacacacttacacacatatatatatatgatatatctaTCTCTCAATCAGAAATGACGTGGCAttgtaaccCATTTCATGTACCCACTTATACACTCACAGCACCTGAAATGATGCCTCTGGTATGTTTTCTACAGTTGTTTCAGAGATGCCTGATGAAGGTGCTGCACATCGACCTGTGGAAATGCTATCTCTCATACGTCCGAGAAACCAAAGGAAAGCTGCCCAGCTACAAGGAAAAGATGGCTCAGGCGTACGATTTCGCTCTGGACAAAATAGGAATGGAGATAATGTCATATCAGATTTGGGTGGACTACATCAACTTCCTCAAAGGAGTCGAGGCGGTGGGGTCATACGCAGAAAACCAGCGAATCACGGCTGTGCGGCGGGTTTACCAGAGGGGCTGCGTCAACCCCATGATCAACATCGAACAGCTGTGGAGAGATTACAGTAAATACGAGGAggGTATTAATATACACTTGGCTAAAAAGATGATAGAGGATCGGAGCAGGGACTATATGAACGCTCGGAGAGTGGCTAAGGAATATGAGACCGTGATGAAAGGCTTGGACAGGAACGCTCCCTCAGTACCCCCACAGAACTCTCCTCAGGAGGCTCAGCAGGTGGAGATGTGGAAGAAATACATTCAGTGGGAGAAGAGCAACCCCCTGCGCACAGAAGACCAAACACTAATCACCAAGAGAGTGATGTTTGCCTACGAGCAGTGCCTTCTGGTGCTTGGCCATCACCCTGACGTCTGGTACGAGGCTGCCCAGTATCTGGAGCAGTCCAGCAAGCTGCTGGCAGAGAAAGGGGACATGAACAATGCTAAGCTGTTCAGTGACGAGGCCGCCAACATCTACGAGCGTGCCATCTCCACTCTACTGAAGAAGAACATGCTGCTGTATTTCTCCTTTGCTGACTACGAGGAGAGTCGAATGAAGTATGAGAAAGTACACAGCATATACAACCGCCTGCTAGCTATAGAGGACATCGACCCGACTTTGgTTTACATTCAGTATATGAAATTTGCCAGAAGAGCAGAGGGTATAAAGTCCGGTCGTTCTATTTTTAAGAAGGCCAGAGAAGACGTTCGGACACGGCACCACGTTTACGTCACAGCTGCTCTTATGGAATACTACTGCAGCAAGGACAAATCAGTGGCGTTTAAGATCTTTGAGCTGGGCCTGAAGAAGTACGGAGACATCCCGGAGTATATTCTGGCATATATAGATTATCTCTCTCATCTCAATGAGGATAACAATACGAGGGTGCTGTTTGAGAGGGTTTTGACATCTGGAAGtctttctccagagaaatcCGGggaGATCTGGGCTCGTTTCTTGGCGTTTGAGAGTAATATAGGAGATCTGGCGAGTATCCTGAAGGTGGAGCGGAGGCGTTTTATGGCGTTTAAAGATGAATATGAGGGGAAGGAGACGGCCCTGCTGGTGGACAGATACAAGTTCATGGATCTGTACCcctgctcctccagtgaacTCAAAGCTCTTGGATACAAGGATGTATCCCGTGCTAAATACGCTGCACTGATCCCGGAGGCAGTGGTGGCGCCTTCAGCCCCCACCCTGAAAGATGAGACTGACCGTAAACCAGAGTATCCAAAACCAGACACCAATCAGATGATCCCCTTCCAGCCACGACACCTCGCTCcCCCGGGCCTGCACCCTGTTCCTGGAGGTGTGTTTCCTGTGCCTCCAGCTGCTGTTGTGCTGATGAAGCTGCTGCCTCCTCCAACCTGTTTTATGgGTCCGTTTGTAAAAGTGGATGAGCTGATGGAATCGTTTAGAAGATGCACATTACCTGAAActgtaGAAGCTGCTGTGGAGCTGATCACGGGGAGTCGCCCCGACGCTCCAATGGAGGGGAACGGCCCAGTGGAGAACCACGCCGTGGCCAACAAGGCCCTGAAGAGACCCAACGCCGACTCagacgaggaggaggagaaaggagCCGTCGCCCCTCCGGTTAACGATATCTACCGAGCGAGACAGCAGAAGAGGATCCGATGAGCCCCGCCCACCTACACACATacctgtacaaacacacacctgtacaaatacacacacactgattatCTCACCACGGACACACCAACCTCTAACCCAACTGTTCCTCCAGTGATTCAATCTCTTACctgatcctcctcctcctctcttatTAGATGTGTTTAATTGAAAACACACACCAGAATGTATCATCTACCTTTAaacctcttcttttttttttttgaggtttttGACTCGTcgagacggacagacagactcATCAGTTCAGATAACTCGAGTCTCTTCACTGATCTCCTCTCATCTCCTCAGATCTTCTCCGATTATCTTCGTGGTTCCTGccgattttttttgttctggtgtttttgatgtttgcttcttcttttttttaaggaaaaaaagacagttttatttttaaaactgagTGGCTTATATTGTACAAAGTTTTTATTCTGGATGTTGATTTTGACACGTAGTTCGGAGCTTACCTCGTGTAGTAACTTGGTGATGGAAGAATCGGAAACATCGGCCGTGTCATTTTGTAGTGAAATGGAAATTAAAACAACTTCACTtccaataaaactaaaaaacatctaaaactga

Function

symbol description
cstf3 Predicted to enable mRNA binding activity. Predicted to be involved in RNA 3'-end processing. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human CSTF3 (cleavage stimulation factor subunit 3).

NR:

description
cleavage stimulation factor subunit 3-like

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K14408 CSTF3, RNA14; cleavage stimulation factor subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665980.1 True 3028 mRNA 0.47 20 2076601 2112984

Neighbor

gene id symbol gene type direction distance location
LOC103031553 pcyt1a,LOC108440592,LOC108264716,LOC107091881 coding upstream 229017 1834677 ~ 1847584 (+)
LOC103029868 NA coding upstream 285725 1787316 ~ 1790876 (+)
omp omp,ompa,LOC107660685,LOC107735103 coding upstream 326358 1745320 ~ 1750243 (+)
LOC103038299 gdpd4a,LOC108431176,LOC108264809,LOC107735911,LOC107660699 coding upstream 442392 1585462 ~ 1634209 (+)
pak1 pak1 coding upstream 512137 1461963 ~ 1564464 (+)
eif3m eif3m,LOC107602127,LOC107671036 coding downstream 108985 2221969 ~ 2236883 (+)
pex16 pex16,LOC107753012,LOC107669959,LOC106593118 coding downstream 881084 2994068 ~ 3009972 (+)
LOC103038331 LOC108433450 coding downstream 906175 3019159 ~ 3035820 (+)
cep126 NA coding downstream 957252 3070236 ~ 3107407 (+)
G308501 rnpepl1 non-coding upstream 77854 1997233 ~ 1998747 (+)
G308474 NA non-coding upstream 142483 1862898 ~ 1934118 (+)
G308470 NA non-coding upstream 165956 1854641 ~ 1910645 (+)
G308457 NA non-coding upstream 253006 1789538 ~ 1823595 (+)
G308465 NA non-coding upstream 257500 1817060 ~ 1819101 (+)
G308552 NA non-coding downstream 82007 2194991 ~ 2195304 (+)
G308549 NA non-coding downstream 85856 2198840 ~ 2207792 (+)
G308640 NA non-coding downstream 133327 2246311 ~ 2265533 (+)
G308645 NA non-coding downstream 187958 2300942 ~ 2301238 (+)
G308649 NA non-coding downstream 241143 2354127 ~ 2409980 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other upstream 56470 2017464 ~ 2020131 (+)
serp1 NA other upstream 243927 1827904 ~ 1832674 (+)
G308090 NA other upstream 1890526 185337 ~ 186075 (+)
G308535 depdc7,LOC107758055,LOC107576633 other downstream 18095 2131079 ~ 2143963 (+)
G308643 kifc3 other downstream 206907 2319891 ~ 2338166 (+)
G308680 NA other downstream 443343 2556327 ~ 2556569 (+)

Expression


Co-expression Network