CI01000014_00660099_00665508 (SKP1.S, BRAFLDRAFT_124598, SKP1A, SKP1)


Basic Information

Item Value
gene id CI01000014_00660099_00665508
gene name SKP1.S, BRAFLDRAFT_124598, SKP1A, SKP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000014
NCBI id null
chromosome length 1317303
location 659990 ~ 665698 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000014_00660099_00665508.mRNA
AAATCTCACACAGCGAGCTGTAGTGTTTTCACTCTTCCATTATGTGATCGTCATTTCTGTGCAACATTTACCTGTTTAACTCAGTCCTGTCGGTGTCTGAGTGCTGGTGAATGTGAGCTAACACAGCTAGCATGAGTCATTAGCTCCTGACTGACATTCGTGTCTGTTATTGTGTTTTATTCGTGTAGATATGCCGACTATTAAACTGCAGAGCTCTGATGGAGAGATGTTTGAGGTGGATGTTGAAATTGCCAAGCAGTCTGTGACCATCAAAACCATGCTCGAAGCTGTCTTCTGCTCAGATCTGGGGATGGACGATGAAGGTGATGATGATCCGGTTCCTCTGCCCAATGTGAACGCAGCCATCCTGAAGAAGGTGATTCAGTGGTGCACCCACCATAAAGATGACCCTCCTCCACCTGAAGACGACGAGAATAAAGAGAAAAGAACAGATGACATCCCCGTGTGGGACCAGGAGTTCCTCAAAGTAGACCAGGGCACTCTCTTCGAACTCATTCTGGCTGCAAATTACTTGGACATCAAAGGCTTGCTAGATGTTACTTGCAAGACAGTTGCAAACATGATCAAAGGCAAAACCCCAGAGGAGATCAGAAAGACTTTCAATATCAAAAATGATTTCACAGAGGAAGAGGAAGCCCAGGTACGCAAGGAGAACCAGTGGTGTGAAGAGAAGTGAAGATCCTGACACACTTTAACACTATGGATTGTTCCAAAAAAATTTAAAAAGTAATTAAAAAAATATTGCACTGCGCTGTTCATATTTGTTTAGATTTAACACAAATAAA

Function

symbol description
skp1 Predicted to enable cullin family protein binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within phosphorylation and ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human SKP1 (S-phase kinase associated protein 1).

GO:

id name namespace
GO:0035518 histone H2A monoubiquitination biological_process

KEGG:

id description
K03094 SKP1, CBF3D; S-phase kinase-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000014_00660099_00665508.mRNA True 806 mRNA 0.43 5 659990 665698

Neighbor

gene id symbol gene type direction distance location
CI01000014_00466896_00506088 RAPGEF6 coding downstream 153902 466212 ~ 506088 (-)
CI01000014_00094545_00097426 NA coding downstream 562564 94176 ~ 97426 (-)
CI01000014_00058937_00066714 CCT6A.S, CCT6A coding downstream 593276 58727 ~ 66714 (-)
CI01000014_00046124_00047713 NA coding downstream 612277 45107 ~ 47713 (-)
CI01000014_00672822_00683285 PPP2CA, PPP2CA.L, PPP2CB coding upstream 6537 672235 ~ 683862 (-)
CI01000014_00696364_00697192 NA coding upstream 30666 696364 ~ 697192 (-)
CI01000014_00753559_00756594 NA coding upstream 87786 753484 ~ 756594 (-)
CI01000014_00775503_00794925 FNIP1 coding upstream 109180 774878 ~ 794925 (-)
CI01000014_00821373_00846608 NA coding upstream 155476 821174 ~ 848060 (-)
G86411 NA non-coding downstream 117114 542577 ~ 542876 (-)
G86408 NA non-coding downstream 123136 536609 ~ 536854 (-)
G86402 NA non-coding downstream 222217 437539 ~ 437773 (-)
G86386 NA non-coding downstream 237481 422128 ~ 422509 (-)
G86385 NA non-coding downstream 238018 421616 ~ 421972 (-)
G86470 NA non-coding upstream 81389 747087 ~ 747325 (-)
G86472 NA non-coding upstream 82348 748046 ~ 748344 (-)
G86473 NA non-coding upstream 82798 748496 ~ 748847 (-)
G86474 NA non-coding upstream 83379 749077 ~ 749578 (-)
G86482 NA non-coding upstream 92265 757963 ~ 758187 (-)
G86530 NA other upstream 319520 985218 ~ 985744 (-)
G86532 NA other upstream 321846 987544 ~ 988027 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019884 skp1 coding NC_007132.7 CM002905.2 45341786 ~ 45349548 (-)
bowfin (Amia calva) AMCG00011267 skp1,Skp1,SKP1 coding CM030133.1 CM030133.1 16143839 ~ 16148914 (+)