CI01000014_00775503_00794925 (FNIP1)


Basic Information

Item Value
gene id CI01000014_00775503_00794925
gene name FNIP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000014
NCBI id null
chromosome length 1317303
location 774878 ~ 794925 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000014_00775503_00794925.mRNA
CTGGTCCTCGCCAGAGCTGGAGCCCAGCCAGATCCGCCTCATCGTCTACCAGGACTGCGAGCGGCGCGGCAGGAACGTCCTCTTCGACTCAGATGCCAGAAAGAGAAGCACAGAAGACGCCCCCGTCACGAGGGTGTGTGGAGAGACGCAGGCGAAGATGTTTGGGAAGTGTTGTCAGCTGAGGCCGACAGGCGGCAGCTCCAGTTCACTGGACAGCAGCTCGTCCTGCGCCTCTGAGCCCAGAGAACAAAGCCGCTTCCAGGCCTCGTCACGGTGTTCTTCAGACGCTAACATGCTCGGAGAAATGATGTTCGGCTCAGTGGCCATGAGCTACAAAGGCTCAACGCTGAAGATCCACCAGATAAGGTCTCCTGCACAGCTGATGCTCAGTAAAGTGTTTACAGCCAGAACAGGTGGCAGCGCCTACGGCAGCCTGAACACACTGCAGGACAGTTTGGAGTTCATCAGTCAGGACTCCAACGCGCTCCGGCCCGAGCAGAACACTGTGGCCAACGGCTTCCTGGGCAGCATAGTTGGATGTGTGTCTTTCTCCTCATTTGTCTTCCTGCTCTCCCTGACCGCGGTCCGTACAGGTTTCTCTCAGCTCTGCAGCCCGCGCCGGGCGCTCTCAGAGCAAGGTCCTCTCCGGCTCATCAAGAGCGCCTCTTTCTTTTCAGGTCACAGCAACCCCATGGACATGCCCGGCCGAGGACCGTATGACGAGCGAGACAGCGGCATTGCTCGCTCAGCGTCTTTAAGCAGCCTCTTGATCACCCCGTTCCCATCGCCGGGCTCCTCTCTCACCAGTAGCTGTGCCAGTAGCTACCAGCGGCGCTGGTTACGCAGCCAGACCACCAGCTTGGAGAACGGCGTCTTCCCTCGATGGTCTGTGGAGGAGAGCTTCAACATGTCTGATGAGAACAGTGGGCCGAGTCTGGGCGTCGCCAGGAAGAAGAAGATCGCTATCGGCGTCATCTTTATGCTCTCGCCCAATGAGGAAGAAAACGCCAAATTCCAGGACTTTTTCTTCTCTCACTTTCCGCTCTTCGAGAGCCACATGAACAAACTCAAAAGTGCCATTGAGCAGGCTATGATACTGAGCCGCAGGTCAGCTGATGCCAGCCAGAGAGCTTTGGCTTACAGTCGAATGGTGGACGGCCTAAATGAGTTTAGGACCACCATCTGCAACCTGTACACGATGCCACGTGTGTCCGAGCCCGTCTGGCTCACCATGATGTCGGGTCCACCTGAAAAGAACCAGCTTTGTGGGCACTTCATGAGGGAGCTGGCCCTGCTCATGGAGCAAGCCTCCAAGAACCAGTTGAGTAACGTCATATTCCTCCCAGCGCTTCTCACTGCAGTTCTCACTAACCATCTTGCCTGGGTGCCCACAGTCATGCCCAACGGTCAACCACCCCTTAAGATCTTCCTGGAGAAGCACTCCTCACCGAGTGTGGACATGCTGGCAAAAACACATCCCTACAACCCTCTCTGGGCACAGCTTGGTGACTTGTATGGGGCAATCGGCTCACCTGTGCGTCTGTCCCGTACGGTGGTGGTTGGCCGACGTCAAGAGCTGGTTCAGCGTCTTCTCTACGTGCTGACGTACTTCATCCGCTGCTCAGAGTTACTGGAAACGCACCTGCTGGAGAGCGCCGAGGACGAGGCCATCGTCATGCCCGGCTCGCTCATCACCACCTCGCTGCGCCGCGGAGAGGTGGAGGAGTCCGACTACGTGCTGGTCACGGTACACAAGCCGAGCCAAGACTACCTGTCCCAAGGTGCCGAGGCAGAGGGCGGATACCCCTCTGATGACCGCAGCACGTACACGGACGGAGAAGCCCCAGACGAACACAAGCGTCCCGTGGTACCGGAGGGAGACGCACCTGTCTGCAGGGAGGCGGAGAGCCCGCGGCTCGAGACTCGGGTGGAAACCGTGGTAAAGATCGGATCCACCTCGCCGTGTGAAAGAAGAACCTCGCTCGAGGTTTCAGGGGATGTGCGGCCTGAGGTTGAAGTTGGTGGCGTGCCCATCAGGATCCTCCATTCATCCAGTGTCCCACTAGAGAAGAAGCCCCCTGACAAGAGCTCAACACTCACAACCTTTCATCACGACGAGAACGAACCCTCTGCCAAAGTCACATTCCTCATCGGAGACTCTATGTCTCCTGAATCTGACATGGAGAGTCGGCAACTAAAGGTGGAGGAGGAGATCAAGAAACACAAGAAGCTCCTCAAGGACATCCAGCAGAAGCAGAGTAGCGGTGAGGCGAAGCTTAAAGTGGACCAAATCAAGACCAACGACAGCAAGAATGGCGTGTTTGTAAAGTGGAGTCCAAGAGTGCAAGGGGACTGCACGGACATGTTCGACGAGTATTTCAGTGATGACAACCCTGTGGAGACGAGGACTATTGATGATGTCTTCCCAACACCTGCACAAATAGGGACAAAAGGTGCCCCAAATCTGCAAGGGTACCAAGTTAGGGTGCATGGACTGACCTCTGCACTGTCGGACAAGGACGGTTGTGGGTGCAAAGCTGGAGATGTCAGCACGGGCTGTTGTAAAACCTGCTGTTCTGCCGAGCAGGACAAGGGTATTGAGATATCGCTGTGTGTGCCTTCACAAGGCACAGCTGGGGATAAAACGAAAGCCCTCCCACTGAACGATTGGGAGATCCCACGCAACGAGAGCTCCGACAGCGCGCTGGGGGACAGCGAGAGCGAGGACGCCGGACAGGAGCTGCCTAGGCAAGAGTCCGATGGAACGTTGTACGGCGACGACCAGGCCGACTGGCAAGATGAGCTCGAGGTGCCGTTACCCGGGGCGAAGCTGGTGGAAAACTACTCTAAACCGAGCATCGCAAACTTTGGGAGGTCATTGTTTGGTGGATACTGTCCTACATACGTTCCGGACTTTGTTCTGCACGGAGCCCCCAATGATGAGAAACTGAGGCAGAACCTCGTGTCAGACCTGGCCCATGCTGTGCAGCATCCTGTGCTGGATGAGCCCATCGCCGAGGCTGTCTGCATTATCGCAGACACAGATAAGTGGAGCGTGCAGGTGGCCAGCAGCCAGAGACGACCCTCCGAAAAGCTGGGACAGGAAGTGCTCGTGTCCAACCTCGTGTCCAACCTGCTCCAGTCCACGTACCAGCTCTACCGACTCAACCTGTCGCCAAACTTCTGCATCATGCACCTGGAGGACCGGCTGCAGGAACTGTACTTCAAGAGCAAAATGCTGGCGGAGTACCTGAAAGGACAGACCAGGGTGCATGTGAAGGAGCTGGGCATGGTTCTGGGGATCGAGTCTAACGACCTGCCCCTGCTAGCGGCCATAGCAAGCACACACTCGCCGTACGTGGCCCAGATCCTCCTATAGACCACATATAGAGAGAGCGAGAGACTCCATTCCCGCGTCGGCAGCTGTGCCGGCTTCTCCAGGTTCAGGATGCCTGGACGGGCACCGTGAAGCTCCTGGGACTCCTGGAACGGAGCAGAGAGGCTGGGTGTTCACTGGGATCGGTCTCAGGGTGAGCGTACTGCAGGACAGATGCTCTGCCATCAGGTAGCGGCGGTGGACGAAACCCGGAGATTCCCAGAAAGACACTCGTAACTGTCACTTTTTGACACATGGACAGAGTTTTTTTTAATTCCATATACCACATTATGTTTTATGTCTCGTTTCTTCACACAATGTCAGAATGTAGAAGCCAAAGAAGATATCCAAGCATACATCACGAACAAACACTGAAAGCCGTTCACGGCACCTTCTTCTTCAAATCATCATAGGAAGCAAAGACTTCGTTATTCGGAACTTATAAAATCAGTTTTATGATTTTTAGATTCATGTGTTCTCAATGGATTGTGGCGGTGAGTGATCATGTAATATCCGTTTACAAGAGAACTATCCCTGTTGTTTCCAGAGCTCTACCTCAGACCTTCACACACACACACACTTTTCTAACATGTTAAATTAAACACTTGAGGTAAATCCACCCAATAAA

Function

symbol description
fnip1 Predicted to enable ATPase inhibitor activity and chaperone binding activity. Predicted to be located in lysosomal membrane. Predicted to be active in cytoplasm. Orthologous to human FNIP1 (folliculin interacting protein 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000014_00775503_00794925.mRNA True 4004 mRNA 0.55 17 774878 794925

Neighbor

gene id symbol gene type direction distance location
CI01000014_00753559_00756594 NA coding downstream 18284 753484 ~ 756594 (-)
CI01000014_00696364_00697192 NA coding downstream 77686 696364 ~ 697192 (-)
CI01000014_00672822_00683285 PPP2CA, PPP2CA.L, PPP2CB coding downstream 91016 672235 ~ 683862 (-)
CI01000014_00660099_00665508 SKP1.S, BRAFLDRAFT_124598, SKP1A, SKP1 coding downstream 109180 659990 ~ 665698 (-)
CI01000014_00466896_00506088 RAPGEF6 coding downstream 268790 466212 ~ 506088 (-)
CI01000014_00821373_00846608 NA coding upstream 26249 821174 ~ 848060 (-)
CI01000014_00852874_00874645 NA coding upstream 57590 852515 ~ 874736 (-)
CI01000014_00880909_00886292 SLC22A4 coding upstream 85816 880741 ~ 886292 (-)
CI01000014_00891730_00895427 NA coding upstream 96752 891677 ~ 895581 (-)
CI01000014_00954505_00954792 NA coding upstream 159516 954441 ~ 955012 (-)
G86492 NA non-coding downstream 8052 766597 ~ 766826 (-)
G86491 NA non-coding downstream 8942 765457 ~ 765936 (-)
G86483 NA non-coding downstream 16272 758284 ~ 758606 (-)
G86482 NA non-coding downstream 16691 757963 ~ 758187 (-)
G86474 NA non-coding downstream 25300 749077 ~ 749578 (-)
G86498 NA non-coding upstream 82529 877454 ~ 878486 (-)
G86514 NA non-coding upstream 133453 928378 ~ 928687 (-)
G86515 NA non-coding upstream 134784 929709 ~ 929933 (-)
G86528 NA non-coding upstream 187675 982600 ~ 982890 (-)
G86530 NA other upstream 190293 985218 ~ 985744 (-)
G86532 NA other upstream 192619 987544 ~ 988027 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019229 fnip1 coding NC_007132.7 CM002905.2 45510448 ~ 45553237 (+)