CI01000014_00880909_00886292 (SLC22A4)


Basic Information

Item Value
gene id CI01000014_00880909_00886292
gene name SLC22A4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000014
NCBI id null
chromosome length 1317303
location 880741 ~ 886292 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000014_00880909_00886292.mRNA
ATGAGGGACTATGATGATATCACATCTTTTCTGGGAACATGGGGTCCGTTCCAGCTGACTGTTTTCTTTGCATTGGCTATAAGTATTCTTCCAAATGGTTTTGTGGGCCTCTACATCGTTTTTGTGGGTGATACGCCATCTCACGAGTGTCTGATCCCTGAGGAGTACAACATCAGTGCCATGTGGAGAGAAGCTGCAATCCCAACGGTGATGGAAGATGGCGTTTTAAAACGCAGTTCCTGCTCCAGATACAAAATGGAAACTCTGAGAAATTTTTCCATGCTTAATTACATCCCAAATGTGGATGTCAATGTCAGCGAGATAGAGATGGAGTCCTGTGTGAATGGCTGGAACTACAGTAAAGTGATTTATGAGTCTACGATAGTGACAGAGTGGGACCTGACTTGTGAGAATGAGTACAAAGGCCCTCTGACCTCATCTATATACTTCTTCGGTGTGTTGGTGGGGACCTTTCTTTCAGGACAGATGTCTGACAGGTATGGCAGAAGACCTATACTGTTTGCCATGATGGCCATGCAGACAGTAACCATCCTTATCCAGATGTTTTCTCCAAGCTGGGAAATCTTCACTGCCATCTACTTCTTTGTGGGATTTAGTGGTTTTTCTAATTATGTTGTAGCATATGTCCTAGGCTGTGAAATTCTAAGTCCAGCGAGTCGGGTGGTGTTCGGTTCTCTGGGTATCTTCATGGGATCTGGAATTGGTCAGATGTTCTTTCCTTTAGCAGCTTATTTCATCCGCAGCTGGCGATGGCTGGTGCTCACAAACGCCCTCACTGGACTCCTCTATGTGCCACTGTGGTGGTTTATTCCTGAGTCTCCCAGATGGCTGCTCTCTCAGGGAAGAATAGAGGAGGCTGAGGCCATACTGAGACTCGCAGCTAAAAAGAACAAAGTCACCGCACCTGAGGTCATCTTCACTTCATCTGAGATTGAGGAAGCAGCAAAGATGAGGAAGAAAAAACATAATATTCTGGATATTCTAAGGAACTGTAATGCTGTTTTAACCATCATGATCTGTTCACTTCTGTGGATGGTCATCACCATGTCTTACTATGCTCTCATTCTCAACACCACAAACCTTCATGGAAACCCGTACCTGAATTATTTCCTGTCTGCGGTGGTGGAGGTCCCAGCTTTCATCATCGCCATGTTGTTGCTCAGATACTGCAGCAGGAGATTCTGTCAGTCGTCCACTCTTCTTATGGGTGGAGCGATGATCTTCATCGTACAGCTCATTCCCAAAGGTTAGACATGCACTGACCGTGTCCTGAGTCACACAGTGTGGAAGGTACATGTAATTACAAATCATCATGTATCATTTGTTAAGTCTGAACAGGATGTGAGGTTTAGAAGTAAGACATGTTGTGGTGTAGAAGCTCATAGTTTATCCTCTGGACAGCAATAGACAAACAAAAAA

Function

symbol description
slc22a4 Predicted to enable quaternary ammonium group transmembrane transporter activity. Acts upstream of or within several processes, including detoxification of mercury ion; response to methylmercury; and selenium compound metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye; head; heart; and skeletal muscle. Human ortholog(s) of this gene implicated in rheumatoid arthritis. Orthologous to human SLC22A4 (solute carrier family 22 member 4).

GO:

id name namespace
GO:0050787 detoxification of mercury ion biological_process

KEGG:

id description
K08202 SLC22A4_5, OCTN; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000014_00880909_00886292.mRNA True 1440 mRNA 0.45 7 880741 886292

Neighbor

gene id symbol gene type direction distance location
CI01000014_00852874_00874645 NA coding downstream 6005 852515 ~ 874736 (-)
CI01000014_00821373_00846608 NA coding downstream 32681 821174 ~ 848060 (-)
CI01000014_00775503_00794925 FNIP1 coding downstream 85816 774878 ~ 794925 (-)
CI01000014_00753559_00756594 NA coding downstream 124147 753484 ~ 756594 (-)
CI01000014_00696364_00697192 NA coding downstream 183549 696364 ~ 697192 (-)
CI01000014_00891730_00895427 NA coding upstream 5385 891677 ~ 895581 (-)
CI01000014_00954505_00954792 NA coding upstream 68149 954441 ~ 955012 (-)
CI01000014_00960029_00966472 FAXDC2 coding upstream 73207 959499 ~ 966472 (-)
CI01000014_01018144_01018740 NA coding upstream 131728 1018020 ~ 1018869 (-)
CI01000014_01125316_01139727 PCBD2 coding upstream 238881 1125173 ~ 1140358 (-)
G86498 NA non-coding downstream 2255 877454 ~ 878486 (-)
G86492 NA non-coding downstream 113915 766597 ~ 766826 (-)
G86491 NA non-coding downstream 114805 765457 ~ 765936 (-)
G86483 NA non-coding downstream 122135 758284 ~ 758606 (-)
G86482 NA non-coding downstream 122554 757963 ~ 758187 (-)
G86514 NA non-coding upstream 42086 928378 ~ 928687 (-)
G86515 NA non-coding upstream 43417 929709 ~ 929933 (-)
G86528 NA non-coding upstream 96308 982600 ~ 982890 (-)
G86531 NA non-coding upstream 100868 987160 ~ 987439 (-)
G86530 NA other upstream 98926 985218 ~ 985744 (-)
G86532 NA other upstream 101252 987544 ~ 988027 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location