CI01000014_00960029_00966472 (FAXDC2)


Basic Information

Item Value
gene id CI01000014_00960029_00966472
gene name FAXDC2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000014
NCBI id null
chromosome length 1317303
location 959499 ~ 966472 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000014_00960029_00966472.mRNA
GAAAACACTGGAGGACTTTGGGACTCGGTGAAGAAAGCAGCTTTTGTCATCGGATCTGGGCTTTTCTTCCTGGTCGGGTTCAGAAACTCTGTGACATGGCATCTGCAGAGGTTCTGGGGAGCGTCTGGAGATTTCTGGCAGACACAGTGGACCAAACTTCACCTCGCCTTGGGTGGAAATGAGGCTGCCTTGTTTTTTATCGGGACCATGTTGGTGCCGACGCTCTCGTTTTGGTTGTTTAACGCCCTGCTGATGGTGGTCGACACGACAGGAAAGCCCAGCTTCATCACACGCTACAGGATTCAGCCTGACAAAAACAATCCGGTGGATGTGGGCCGGTTGCGTCATGCGGTGAAGACGGTGCTGTTTAACCAGGTGTGTCTGTCGGGGCCGGTGGTGGTTCTGACCTACATGCTGATGAAGTGGCGCGGGGATCCGTGCGGCCCGGAGCTGCCCACCTTCCACTGGGTGCTGCTGGAGCTGGCCGTCTGCGGCCTGATGGAGGAGATCCTCTTCTACTACACACACAGGCTCGTCCACCATCCGTCGCTCTATAAGAGCATCCACAAGATTCATCACGAGTGGACGGCTCCGGTGGGAGTGGTGGCGCTCTACGCTCATCCGGTGGAGCATGTGCTGTCCAACATGCTGCCGGCTCTGGCGGGTCCGATCCTGCTCGGGTCACATGTCGCCACCACCAGCCTCTGGTTCACTATTGCTCTGCTGGTGACGACCGTCTCTCACTGCGGTTACCACTTACCCCTGCTGCCCTCGCCCGAGTTTCACGACTTCCACCATCTCAAGTTCAATCAGTGCTATGGAGTGCTGGGTGTGCTGGACAGGCTTCACGGGACCGACGAGAAGTTCCGTAACTCAAAGGCGTATGAGCGGCACACCGTCCTGCTGAGTCTGACCCCGCTGAGCGAGAGCATCCCTGAAGATGCCAAGAGAGCACAAGATTAACCTCACTGAGAGAGAACAGAATCCACATGTTCCTGTTTACTCTGCAAAGCTACTTTAATTGCGCAAGAGTTTGTAATCGATCTGGAGTATGGACACACACTCCTGCGTTCAGGATCACAGTGTTAAGGTTCAGGTTATTCAACCTAAAGCATTTCACTAATATATCAGGACTAAGCTAATTTACTGTTTCACACTTCACCTTATCTGAAGCTGCTCTGGTCGATGTTTGAGATCAGGGTTCAAATGCTGTTTGATGCACTCTAATGACCTGGTGTCATGTACAGAGATGATCCATTCCTGTATACAGTCCTTTTTATTGTTCTTAATCTTCTGTGTCTGTGTTCTCATATTGTCAAAATAGCACCAACATTTATACAGTTGATGAAAATGATTTTAATAATTCTGATCAATGATGTATTTTAATACTGAAAATCTAGTGATGGTTCTTGGGAATGAACTGTTGTACACGTGTTCATCTACTCTTCATGATGTGAGTTTCTGGATTTTCTGATGGAAGCTCAATCATTAAA

Function

symbol description
faxdc2 Predicted to enable C-4 methylsterol oxidase activity. Predicted to be involved in sterol biosynthetic process. Predicted to act upstream of or within lipid biosynthetic process. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human FAXDC2 (fatty acid hydroxylase domain containing 2).

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process

KEGG:

id description
K07750 MESO1, ERG25; methylsterol monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000014_00960029_00966472.mRNA True 1493 mRNA 0.50 7 959499 966472

Neighbor

gene id symbol gene type direction distance location
CI01000014_00954505_00954792 NA coding downstream 4487 954441 ~ 955012 (-)
CI01000014_00891730_00895427 NA coding downstream 63918 891677 ~ 895581 (-)
CI01000014_00880909_00886292 SLC22A4 coding downstream 73207 880741 ~ 886292 (-)
CI01000014_00852874_00874645 NA coding downstream 84763 852515 ~ 874736 (-)
CI01000014_00821373_00846608 NA coding downstream 111439 821174 ~ 848060 (-)
CI01000014_01018144_01018740 NA coding upstream 51548 1018020 ~ 1018869 (-)
CI01000014_01125316_01139727 PCBD2 coding upstream 158701 1125173 ~ 1140358 (-)
CI01000014_01140519_01142565 NA coding upstream 173994 1140466 ~ 1142565 (-)
CI01000014_01147718_01148317 NA coding upstream 180109 1146581 ~ 1148317 (-)
CI01000014_01151900_01162885 DDX46.L, DDX46 coding upstream 185271 1151743 ~ 1162885 (-)
G86515 NA non-coding downstream 29566 929709 ~ 929933 (-)
G86514 NA non-coding downstream 30812 928378 ~ 928687 (-)
G86498 NA non-coding downstream 81013 877454 ~ 878486 (-)
G86492 NA non-coding downstream 192673 766597 ~ 766826 (-)
G86528 NA non-coding upstream 16128 982600 ~ 982890 (-)
G86531 NA non-coding upstream 20688 987160 ~ 987439 (-)
G86535 NA non-coding upstream 25239 991711 ~ 991935 (-)
G86539 NA non-coding upstream 31731 998203 ~ 998422 (-)
G86540 NA non-coding upstream 31972 998444 ~ 998708 (-)
G86530 NA other upstream 18746 985218 ~ 985744 (-)
G86532 NA other upstream 21072 987544 ~ 988027 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019239 faxdc2 coding NC_007132.7 CM002905.2 45839917 ~ 45852112 (+)
bowfin (Amia calva) AMCG00011502 NA coding CM030133.1 CM030133.1 27484188 ~ 27496643 (+)