Gene
RNA
| Item | Value |
|---|---|
| gene id | G86491 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000014 |
| NCBI id | null |
| chromosome length | 1317303 |
| location | 765457 ~ 765936 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU98487 | True | 396 | lncRNA | 0.40 | 2 | 765457 | 765936 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000014_00753559_00756594 | NA | coding | downstream | 8863 | 753484 ~ 756594 (-) |
| CI01000014_00696364_00697192 | NA | coding | downstream | 68265 | 696364 ~ 697192 (-) |
| CI01000014_00672822_00683285 | PPP2CA, PPP2CA.L, PPP2CB | coding | downstream | 81595 | 672235 ~ 683862 (-) |
| CI01000014_00660099_00665508 | SKP1.S, BRAFLDRAFT_124598, SKP1A, SKP1 | coding | downstream | 99759 | 659990 ~ 665698 (-) |
| CI01000014_00466896_00506088 | RAPGEF6 | coding | downstream | 259369 | 466212 ~ 506088 (-) |
| CI01000014_00775503_00794925 | FNIP1 | coding | upstream | 8942 | 774878 ~ 794925 (-) |
| CI01000014_00821373_00846608 | NA | coding | upstream | 55238 | 821174 ~ 848060 (-) |
| CI01000014_00852874_00874645 | NA | coding | upstream | 86579 | 852515 ~ 874736 (-) |
| CI01000014_00880909_00886292 | SLC22A4 | coding | upstream | 114805 | 880741 ~ 886292 (-) |
| CI01000014_00891730_00895427 | NA | coding | upstream | 125741 | 891677 ~ 895581 (-) |
| G86483 | NA | non-coding | downstream | 6851 | 758284 ~ 758606 (-) |
| G86482 | NA | non-coding | downstream | 7270 | 757963 ~ 758187 (-) |
| G86474 | NA | non-coding | downstream | 15879 | 749077 ~ 749578 (-) |
| G86473 | NA | non-coding | downstream | 16610 | 748496 ~ 748847 (-) |
| G86472 | NA | non-coding | downstream | 17113 | 748046 ~ 748344 (-) |
| G86492 | NA | non-coding | upstream | 661 | 766597 ~ 766826 (-) |
| G86498 | NA | non-coding | upstream | 111518 | 877454 ~ 878486 (-) |
| G86514 | NA | non-coding | upstream | 162442 | 928378 ~ 928687 (-) |
| G86515 | NA | non-coding | upstream | 163773 | 929709 ~ 929933 (-) |
| G86530 | NA | other | upstream | 219282 | 985218 ~ 985744 (-) |
| G86532 | NA | other | upstream | 221608 | 987544 ~ 988027 (-) |
