G86329


Basic Information

Item Value
gene id G86329
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000014
NCBI id null
chromosome length 1317303
location 283652 ~ 347420 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU98312
CAAAGGGTGTGAGGCCATGTTGTGCTGCTTTAGAGAAGAGGAAGAGTTGTTGTAGTAGAGTGTTGTTGACATGCCGTCATTTTACGCCGGACTGCTTCACAAACGAGGGTCAATTCAACACAAAAGATTAACATGACGGCACATGATAGTGGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTTAGAAACATCCAGTTTCATTCTAAAAGTTGTATCTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCAGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGTCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCGACCGAAGCGTGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAAAGGGGGCCGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAATGGTGTGTTTTTGCTCACACCCAAATAGGGGCAAATTTGACAAGCTATAATAAATGATCTGTGGGGGATTTTGAGCTGAAACTTCACAGACACATACACCAGAGACTTATATTACATCTTGTGAATAGGGGGGTTATAGGTCCACTTTAAGTAAACTAAATTAAACAATGACTAACTTAAATGTTTCTTAAGTGAAACAATCTTAAGAGAACTTTCTACTGTCATATAACTAATTTAGCTTCTATTTATTATAAAATTAATGTCATGTTTACCTACATTA
>TU98313
AAGCGTGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCCGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAATGGTGTGTTTTTGCTCACACCCAAATAGGGGCAAATTTGACAAGCTATAATAAATGATCTGTGGGGGATTTTGAGCTGAAACTTCACAGACACATACACCAGAGACTTATATTACAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU98312 False 729 lncRNA 0.39 3 283652 347420
TU98313 True 204 lncRNA 0.44 2 305795 341482

Neighbor

gene id symbol gene type direction distance location
CI01000014_00094545_00097426 NA coding downstream 186226 94176 ~ 97426 (-)
CI01000014_00058937_00066714 CCT6A.S, CCT6A coding downstream 216938 58727 ~ 66714 (-)
CI01000014_00046124_00047713 NA coding downstream 235939 45107 ~ 47713 (-)
CI01000014_00466896_00506088 RAPGEF6 coding upstream 118792 466212 ~ 506088 (-)
CI01000014_00660099_00665508 SKP1.S, BRAFLDRAFT_124598, SKP1A, SKP1 coding upstream 312570 659990 ~ 665698 (-)
CI01000014_00672822_00683285 PPP2CA, PPP2CA.L, PPP2CB coding upstream 324815 672235 ~ 683862 (-)
CI01000014_00696364_00697192 NA coding upstream 348944 696364 ~ 697192 (-)
CI01000014_00753559_00756594 NA coding upstream 406064 753484 ~ 756594 (-)
G86298 NA non-coding downstream 115462 167988 ~ 168190 (-)
G86294 NA non-coding downstream 132400 150975 ~ 151252 (-)
G86293 NA non-coding downstream 134410 148988 ~ 149242 (-)
G86291 NA non-coding downstream 157739 125704 ~ 125913 (-)
G86285 NA non-coding downstream 193080 90359 ~ 90572 (-)
G86381 NA non-coding upstream 69871 417291 ~ 419506 (-)
G86385 NA non-coding upstream 74196 421616 ~ 421972 (-)
G86386 NA non-coding upstream 74708 422128 ~ 422509 (-)
G86402 NA non-coding upstream 90119 437539 ~ 437773 (-)
G86408 NA non-coding upstream 189189 536609 ~ 536854 (-)
G86530 NA other upstream 637798 985218 ~ 985744 (-)
G86532 NA other upstream 640124 987544 ~ 988027 (-)

Expression


Co-expression Network