LOC103028330 (cxxc1,cxxc1a,LOC108440538,LOC107727409,LOC108265945,LOC107674299)


Basic Information

Item Value
gene id LOC103028330
gene name cxxc1,cxxc1a,LOC108440538,LOC107727409,LOC108265945,LOC107674299
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 52456496 ~ 52466298 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245827.3
TCCAGAAACCGGCTCTGGTGAAAAACAATGGTGGATCCTGAACTGATTATAAACtcgtctgtttttctctgatattggatttttACTCTCGGTTTCTGTCTGTCCCCCCGGAGTGTGTGTTCATCTGTCTGTTCTGGCTTTTAGCTGCTTTTTAAATTCGCCATGGATATGCAACGTCCAGCCATCAGTCAAGCAGACATGGAGAGAAGAATGAACCAGAACGCTCCAGTTTATTGTATCTGTCGCAAACCAGACATCAACTGCTTCATGATAGGCTGTGACAGCTGTAACGAGTGGTTTCATGGAGACTGCATTTTTATATCTGAGAAGATGGCAAAAACGATTAGGGTTTGGTACTGTGAGCGATGCCGCAGTAAAGACGGTTCTTTAGAAATTAAGTATCGTCCGAAGaagaacaaagagaaagaagTAGATACAGAGGGAATGGATTCACAGCCTGACACAGACAATGACTACCGGACTGATCGCAAGCGTGGGTCACGATTGACCAACCAAGAGAAGGTGAAGCGCTCTGCACGGATGTGCGGGGAGTGTGAGGCCTGCTGCAGGACGGAGGACTGTGGTCAGTGTGATTTCTGCAAGGACATGAAGAAGTTCGGTGGCCCCAACAAGATCCGCCAGAAATGTCGACTCAGGCAGTGTGAAGTCCGAGCTCGGAAAATGCTGCGGGTGAAGGATGAGGAGTATGCTTTATCTAAAAGCCCACACAATGCCCAGAGAGACTGCCCTCTTTCAGACGATTACAGtgaggatgagctggagctgtaTCATCAGTACCGTGCTGGCAGATTTGGAGACTGTGGCTGGAACAGTGATGAGGAAGACAGTGCATCGCTGGATCCTGCCATGCGAAAGAGAGCCGTGAAGGTCAAACATGTGAAGAGGAGGGAAAAGCGATCAGAGAAAAAGcagaaagAGGAGAATAAGCCTCGTAAGCACAAACCCAAGCAGAAACATCGGGACAAGGTGCGCCACAGTGAGAGGGCCGAGACCCGAGACAATGGGGGGAGCAGGCAATGCCTTGGACCGGGCTGTGTGGAGTCATCTCGCCCCAACTCCAAATACTGCTCTGATGACTGTGGCATGAAGCTTGCTGCCAACCGGATCTATGAAATCCTCCCTCAGCGTATCCAGCAGTGGCAGCAGAGCCCCTGTATTGCTGAAGAGCAGGGCAAGAAACTTCTGGAACGCATCCGGCGTGAGCAACAGTCAGCCCGCCTGAGACTCACTGAGATGGAGAAGCGTTTTCACGAGCTGGAGGGCATCATTGCCAAGGCCAAGCAGCAGGTCGTCCAGCACGATGAAGAGGTAAATGAGGGAGATGATGATACAGACCTTCAGATTTTCTGCGTCTCCTGCAGTCACCCGGTCAACCCCAAGGTGGCGCTACGTCATATGGAGAGATGCTATGCCAAGTATGAGAGTCAGACATCATTTGGGTCTATGTATCCCACACGCATTGAAGGGGCAACAAGGCTGTTCTGTGACGTATACAATCCTCAGAGCAAAACATACTGTAAGAGGCTTCAGGTTCTCTGTCCAGAACACTCCCGGGATCCAAAGATTCCAGCAGATGAGGTATGTGGGTGTCCTCTGGTGCGAGACGTCTTCGAGCCCACAGGAGACTACTGCAGAGTGTCGAAGCGCAAGTGCAACAAACACTACTGCTGGGAGAAGCTCCGCAGAGCCGAGGTGGACCTGGAGAGAGTCAGAGTGTGGTACAAGTTGGACGAGTTGTTCGAGCAGGAGCGTAATGTCCGAACTGCGATGACCAATCGCGCTGGTCTGCTGGCCCTGATGTTGCATCAGACCATTCAGCATGACCCACATGCCACAGACCTGCGCACTGGCAAGGACAGATAGTCACTGAGTGGctatataggattttaatggATGAAGTTCTGAAGACTGATGAGAAGTGGCCTACTGGTGTTGGACTGCTTCTTATAATAGTGCAATGGAGTTTTACACATAAAAGCATAAATCCATTATATGACATTTTCTtaccatttttaattattaacaataaatatataaaaaataaaataataaactggtCTGTTCAGTGTTAAAGGGACCAGCTTTAAGTATCTTAGCTATGTGATTATGATCCAGACCATTACAGGTGCATGtggtttcttaaaataaaagtttattgtaTGTGCTTCAGTGGTTTGACTCTGTAATTGTGTTTGTGTCCATTGttttctcattgtttttttattattcagtaatgCACTCTGTATAGATTTTGTTGTTGTATCGGACTCAtttctttatatctttatatcttgTATGACTTTTATGATCATGCTTAAAAAGCTTGTTGTTTGGGCtttgaaattacaaaaaaatgcattttagcaACTTTTTTAAACCTGAACAAGatatagatattttatatagtcattaaaacacacagtacATGCAGTTAATACAATATGTGCTAATACTGCCATTCCCAGTTAGCAGTTAGCAAGAAGTTGCAATTTCTAGTTTCAGTTATAATTAACTTTGCATATAGTTTGAGAAGTTAACCAATACTGTGTGAGAAATCTACTGTATAAGAAATGTATCACCTTTATCATCACAATTAAATGGATATCACTTtgt
>XM_007245828.3
TCCAGAAACCGGCTCTGGTGAAAAACAATGGTGGATCCTGAACTGATTATAAACtcgtctgtttttctctgatattggatttttACTCTCGGTTTCTGTCTGTCCCCCCGGAGTGTGTGTTCATCTGTCTGTTCTGGCTTTTAGCTGCTTTTTAAATTCGCCATGGATATGCAACGTCCAGCCATCAGTCAAGCAGACATGGAGAGAAGAATGAACCAGAACGCTCCAGTTTATTGTATCTGTCGCAAACCAGACATCAACTGCTTCATGATAGGCTGTGACAGCTGTAACGAGTGGTTTCATGGAGACTGCATTTTTATATCTGAGAAGATGGCAAAAACGATTAGGGTTTGGTACTGTGAGCGATGCCGCAGTAAAGACGGTTCTTTAGAAATTAAGTATCGTCCGAAGaagaacaaagagaaagaagTAGATACAGAGGGAATGGATTCACAGCCTGACACAGACAATGACTACCGGACTGATCGCAAGCGTGGGTCACGATTGACCAACCAAGAGAAGGTGAAGCGCTCTGCACGGATGTGCGGGGAGTGTGAGGCCTGCTGCAGGACGGAGGACTGTGGTCAGTGTGATTTCTGCAAGGACATGAAGAAGTTCGGTGGCCCCAACAAGATCCGCCAGAAATGTCGACTCAGGCAGTGTGAAGTCCGAGCTCGGAAAATGCTGCGGGTGAAGGATGAGGAGTATGCTTTATCTAAAAGCCCACACAATGCCCAGAGAGACTGCCCTCTTTCAGACGATTACAGtgaggatgagctggagctgtaTCATCAGTACCGTGCTGGCAGATTTGGAGACTGTGGCTGGAACAGTGATGAGGAAGACAGTGCATCGCTGGATCCTGCCATGCGAAAGAGAGCCGTGAAGGTCAAACATGTGAAGAGGAGGGAAAAGCGATCAGAGAAAAAGaaagAGGAGAATAAGCCTCGTAAGCACAAACCCAAGCAGAAACATCGGGACAAGGTGCGCCACAGTGAGAGGGCCGAGACCCGAGACAATGGGGGGAGCAGGCAATGCCTTGGACCGGGCTGTGTGGAGTCATCTCGCCCCAACTCCAAATACTGCTCTGATGACTGTGGCATGAAGCTTGCTGCCAACCGGATCTATGAAATCCTCCCTCAGCGTATCCAGCAGTGGCAGCAGAGCCCCTGTATTGCTGAAGAGCAGGGCAAGAAACTTCTGGAACGCATCCGGCGTGAGCAACAGTCAGCCCGCCTGAGACTCACTGAGATGGAGAAGCGTTTTCACGAGCTGGAGGGCATCATTGCCAAGGCCAAGCAGCAGGTCGTCCAGCACGATGAAGAGGTAAATGAGGGAGATGATGATACAGACCTTCAGATTTTCTGCGTCTCCTGCAGTCACCCGGTCAACCCCAAGGTGGCGCTACGTCATATGGAGAGATGCTATGCCAAGTATGAGAGTCAGACATCATTTGGGTCTATGTATCCCACACGCATTGAAGGGGCAACAAGGCTGTTCTGTGACGTATACAATCCTCAGAGCAAAACATACTGTAAGAGGCTTCAGGTTCTCTGTCCAGAACACTCCCGGGATCCAAAGATTCCAGCAGATGAGGTATGTGGGTGTCCTCTGGTGCGAGACGTCTTCGAGCCCACAGGAGACTACTGCAGAGTGTCGAAGCGCAAGTGCAACAAACACTACTGCTGGGAGAAGCTCCGCAGAGCCGAGGTGGACCTGGAGAGAGTCAGAGTGTGGTACAAGTTGGACGAGTTGTTCGAGCAGGAGCGTAATGTCCGAACTGCGATGACCAATCGCGCTGGTCTGCTGGCCCTGATGTTGCATCAGACCATTCAGCATGACCCACATGCCACAGACCTGCGCACTGGCAAGGACAGATAGTCACTGAGTGGctatataggattttaatggATGAAGTTCTGAAGACTGATGAGAAGTGGCCTACTGGTGTTGGACTGCTTCTTATAATAGTGCAATGGAGTTTTACACATAAAAGCATAAATCCATTATATGACATTTTCTtaccatttttaattattaacaataaatatataaaaaataaaataataaactggtCTGTTCAGTGTTAAAGGGACCAGCTTTAAGTATCTTAGCTATGTGATTATGATCCAGACCATTACAGGTGCATGtggtttcttaaaataaaagtttattgtaTGTGCTTCAGTGGTTTGACTCTGTAATTGTGTTTGTGTCCATTGttttctcattgtttttttattattcagtaatgCACTCTGTATAGATTTTGTTGTTGTATCGGACTCAtttctttatatctttatatcttgTATGACTTTTATGATCATGCTTAAAAAGCTTGTTGTTTGGGCtttgaaattacaaaaaaatgcattttagcaACTTTTTTAAACCTGAACAAGatatagatattttatatagtcattaaaacacacagtacATGCAGTTAATACAATATGTGCTAATACTGCCATTCCCAGTTAGCAGTTAGCAAGAAGTTGCAATTTCTAGTTTCAGTTATAATTAACTTTGCATATAGTTTGAGAAGTTAACCAATACTGTGTGAGAAATCTACTGTATAAGAAATGTATCACCTTTATCATCACAATTAAATGGATATCACTTtgt

Function

symbol description
cxxc1a Predicted to enable DNA binding activity and zinc ion binding activity. Acts upstream of or within hematopoietic progenitor cell differentiation. Predicted to be located in nucleus. Predicted to be part of Set1C/COMPASS complex. Orthologous to human CXXC1 (CXXC finger protein 1).
cxxc1 Enables unmethylated CpG binding activity. Contributes to histone methyltransferase activity (H3-K4 specific). Involved in histone H3-K4 methylation and positive regulation of transcription, DNA-templated. Located in cytosol and nuclear speck. Part of Set1C/COMPASS complex.

NR:

description
CXXC-type zinc finger protein 1 isoform X1

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14960 CXXC1, SPP1, CPS40; COMPASS component SPP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245827.3 True 2634 mRNA 0.45 15 52456496 52466298
XM_007245828.3 False 2631 mRNA 0.45 15 52456496 52466298

Neighbor

gene id symbol gene type direction distance location
LOC103027804 NA coding downstream 2187 52433660 ~ 52454309 (-)
LOC103027481 LOC103027481,LOC108440541 coding downstream 33494 52346378 ~ 52423002 (-)
LOC103026406 abcd1,LOC108265308,LOC108440542,LOC107674359,LOC107701814,LOC107727428,LOC107552221,LOC107743108 coding downstream 123411 52310329 ~ 52333085 (-)
plxnb3 plxnb3,LOC108265307,LOC107727420,LOC107674349,LOC107701812,LOC107584917 coding downstream 148693 52158562 ~ 52307803 (-)
LOC103025375 srpk3,LOC107743111,LOC107601770,LOC107727421 coding downstream 303344 52131931 ~ 52153152 (-)
G60805 NA non-coding downstream 37493 52418708 ~ 52419003 (-)
G60798 NA non-coding downstream 190063 52258127 ~ 52266433 (-)
G60781 NA non-coding downstream 263670 52125475 ~ 52192826 (-)
G60782 tsr2,LOC107743119,LOC107727422 non-coding downstream 328349 52126117 ~ 52128147 (-)
G60780 NA non-coding downstream 333438 52120823 ~ 52123058 (-)
G60627 NA other downstream 748384 51706338 ~ 51708112 (-)
LOC103045940 slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205 other downstream 875862 51539498 ~ 51580634 (-)
LOC103032656 LOC108413501 other downstream 947916 51416220 ~ 51508580 (-)
G60441 NA other downstream 1624296 50827695 ~ 50832200 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other downstream 1826332 50565289 ~ 50630164 (-)
LOC103028851 LOC108440537,LOC107674333,LOC108265526,LOC107584878,LOC107727418,LOC107743115 other upstream 18131 52484429 ~ 52524184 (-)

Expression


Co-expression Network