LOC103045940 (slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205)


Basic Information

Item Value
gene id LOC103045940
gene name slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51539498 ~ 51580634 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU81703
ATAACAGAAAaaaaaacacaaagcagTGAACTAAATATGTGACATTTCTAGGTAGCTATAATATAAGTGGGTGTGTAAGTGACTGTGGCAGTACCCTTGTTGTAAAGACATTGTTCTCTGTCTTGATTAATCTGAATGTACCTCCGCTTTGCGTGGAAGCTGTGCACtgcttacacacacaacacaatacaacacaatacaacacaatacaacacaatacaacaaaaaacacacacagatacagtggcttgcaaaagtgttCAACTTTGTAttgaacttttccatattttggcatcttacaaccacaaacttgaaataaataaaatacaaaatgtattatattgagATTtgaagtgatagacaaacacaaagtattgcaaaaGTGTTAAGTGTTTTCAAAACTTTTATCAAATGAAAATccgaaaagtgtgacgtgcaaaagtattcagcccctctatatcaatacttagtggaACCACCATTCGCTGCAATTACAACTGTAAgtgctttggggtttgtctctaccagctttacCAGCATCTAGAGACTGTAGAGATTtctgcccattcttctttataaaacaactCATGATGATGCCgccgccaccatgtttcacagtggggatgctgtgttcagggtgatgagcagcgTTACTCTTTCTCCCCATATAGCGCTGCTTTGCATTCAGGCCAAAAAAGTTCAACATTGGTGTCATCTGGCCACAGCACCTTAAACCTTAAACATGTTTGCTGCAACTGCAAACAGCAAttctctctgcagctcctccagagtgaccatgggcctcttggctgcttctctgaccagggctctccttgctcgatctgtcagtttaggGGGATCATggtcatgtcttggtaggtttttttgcaggtttaaaatactttttctatttttggatgatggattaaacAGTGCTGCTTGGGaagctcaaagcttgggatttaaacttcttctccacaacttcaTCTCtaacctgtctggtgagtttcatggtcttcatgatgctgtttgttcactagtgttctctaacaaaccactgagatcttcacagaacagctgtttatatttatactgagactaaattacacacagctggactcttttaattaaattaactaattaagtgacttctaaataaaattgaactggattttatttaagggttttagagtaaagggggctgaatacttttgtttatgtttcattgtcgttccacttcacacttataataataataatactttttgtttgtgaatcacttaaaatctaaaaaaaaaaggtttaagttTGTGGcagtaaggtgacaaaatgtggacaaaaaaaaaacaattcaaggggtatgaatacttttgcaagccactgtatgcacaaacactcaacacacacacacacacagatgcgtTTGCTTGCTTGGAGAGAGGTAAATCCGTGTGTGCCCATGTTCTCAGTACTGTGCCCTTTTTAAACTCTCCTCGTAACCTAGTGATCACTGCCAGACCAGCTGTAcgcacacactaatacacacatatatacacacacacatatatacacacacacatacacacacacacacacatatccagcATATATCCAGCCATCAGATTACTCGAATACTGTAGGCAGCTGTGCTTTGATATGCTAAGTATCATTCTCCGCTCCTCTCATTTAAAGAGAGGagtttaaatctgattttcttcttttaataaataaataaaacagtgttgcCAGACCCACCCTTTTTCTGCGCATACTCCAGAATCCATACAGCCCATTCATATCCATTACATCCATTACTGGCTTTCAAAAGCCAGTGGAATCCCAATGGAATCCCAATGGAATCTGTTTCATCTGTATGGTCACTGTACTATTcatcatatactgtatttattatggataaaaaatatacatttttagtacattttggACTATATAAAATTATAGCTTCTAATTTCTAGAtcagttgttttttctttattatatctCCAGGGGTCTAGAGGTCGATATCTCTGACATTTCTTGCGATTTAATTCAATTATTCACAATTTTTGTAGATATCATGAAATCACAAATGTTGCCACAATTTTTTATGGATGTgatttttgatttgattttacaaattacaaaaaaaatagcacAGACTAGTATGAATTTGTCTATAGTTCATTTGGAATGTTTTGGCACCACCAaaagtttttaattgtttaataataataataatttgctaCGCCATACAAAAAACTCAACAATTTTACAACAATTTGTtcaggtttgtttttttatataattttttttaaaatatttaatatttaatttggcCAAATGTGAAATTTCTTCACAGTTTGtttagatttaaatatttagatacaATCTACAAATGaccaaatttaaaatttaactaCAGTTTATTTGAATTTGATTACTTAAATGATTGATTACTTCAATTAAAACATCATTGATATTAGCGTTAACTCTAACGTGTTTGTGGAGTCTGAAATAAGCTTTACCATCAATCTCTGCGCAGATGGAGAAATAAAAAGGATGGAAAGGATGGAAATTGATATTTAGTAGTGTTTGAAACTGAGCCttgtttttaggaaaaaaataacaaaaaaacacttgaactgaatattttgatttggttattttgatataattttaaaaatatataatttagcaaaatgttgtaaaatttCACCACAGTTTGTTtagatttaagtatttaaatacaatttacaaAAGACCAAATTTCAAACTGAACTACAGTTTAATTGAAtttgataacttttttttttttttaaatcttgatATTTACATGAATTCCCAGTACATTTTGTAATGTACACTTTTTCATATAGTGGTtatattctattgtattttatttgtacagGTTTGTGATAGAAATTATTATACAATACTGAAAacttctcagtttttttttttttttttacatggattTACATGGCCAAAAgtggaaaacttttttttaaacctgtatAATTAGACTTTAATTCTGCCGTTTACACCCCTACACCCCTACACTCCACTCCACTGAACCATATTTCTACATAAGCCTTTAAACACCTTCACCTTTACACCTCAGTAGCCTGCAGAATAGCTTtaccacacctcacacactccacccacCTCCACCCGCCTCCACCCGCCTCCACTCTGAGGTCACTGCTCCACACTGAAACAAGGGTTTGCtcactttcattttcatttttctcaaatGACGTTTGCCTTTTGTATTAACCATTTTATACTGTACATGATGTGACTGTCAGTGATTTGCTTATATTTTTCTGAATTTATTCAGAAATATAtatccaaatattgatttccatCAGCCTAAATGCAACTTTGCTGTGtgcaatatttgtttaaaaaaagaataaaaaatgacaaaagtgGCTTTATTATCATTTCAGcttgaaaatgtaataaaatcaaATGGTGAAACTCAAGATAACAAAATGTCCATTCACACAGTTTAATGTATGGTAACTGAATTTGATTCAACAATCCAAAAAATCTTGTGTAACCAAAGTAGCTTTGTTATAAACTCAGTCCTTTTGAGATGCATATTGCATCATCTAGAtc
>XM_022670871.1
tgcttttattattcttatttttctttcctcGGATTTATAATTTGgagcaaaatagaaaaaaggaaaacaagacaagacTTGAGCAATAAACACAGCTGACAGAACCGATTGGATTATACCGTTCCTCCTTTGAAAAAAGTCCAGAAGTGTTCTGCTGAATTGCTGGCTTTGAGTCTTCTGAAGTCCTCACAGAACCGAACAGAGTGAACAGTTTCCCTGCCCTGGATTAGCCTCACCGTGTTCAACATTTTCAGCCTTGCTCTCGCACAGTTTAAACCAGGCCAATATGCCGAACATCAGCCACCACCAGCTCACCACCTCTGAtaTGGCACAGAAAGAGAAGCTGCAGTGTCTGAAGGATTTCCATAAGGACACTCTGAAGCCATCCCCAGGTAAAAGTCCAGGCACCCGGCCGGAGGATGAGGCCGAGGGGAAGCCTCCACAGAGGGAGAAGTGGGCCAGCAAGCTGGACTTCCTGCTCTCGGTGGCCGGGGGATTCGTAGGTTTAGGCAACGTCTGGCGTTTCCCCTACCTCTGCTACAAGAATGGCGGAGgtGCATTTCTCATCCCCTATTTCATCTTCCTGTTTGGCGGAGGGCTTCCCGTCTTCTTCTTGGAGGTGGCGCTGGGCCAGTTCACCTCAGAGGGAGGAATCACCTGCTGGGAGAAGCTCTGCCCCATCTTCACTGgaaTCGGCTATGCCTCAATCGTGATCGTGTCCCTGCTGAACATCTACTACATTGTGATCCTGGCGTGGGGGCTGTATTAcctgctgcagtgttttcagagGGAGCTGCCGTGGGCTCGCTGCAGGCACAGCTGGAACACACAGAACTGCGTGGAGGACACCATCCGCAAGAACAAAACCCTCTGGCTCTCCGTCAACGCCACCAACTTCACCTCGCCCGTCACCGAGTTCTGGGAGCGTAACGTGCTCAGTCTGTCGTCAGGCATTGATGAGGTGGGCGAGCTGAAGTGGGACCTCGCCCTCTGTCTGCTGGCCGTCTGGGTCATCTGCTTTTTCTGCATCTGGAAAGGAGTGAAATCCACCGGCAAAgTGGTGTATTTCACTGCTACGTTTCCGTTCCTCATGCTCATCGTGTTGTTGGTGCGTGGGGTAACTCTGCCTGGTGCTTCTGAGGGCATCAAGTTCTACCTTTACCCCGACCTGAGCCGCCTGCAGGACCCCGAGgtctGGATTGATGCAGGAACTCAGATCTTTTTCTCTTATGCTATTTGTCTTGGTGCAATGACTTCGCTGGGGAGCTACAATAAGTACAAATATAACTGCTACAGggacTGCATGCTGCTTGGGTGCCTGAACAGCGGGACCAGCTTCGTGTCCGGCTTCGCCATCTTCTCTGTGCTGGGATTTATGGCGCAAGAACAGGGCGTGGCCATCGCTGATGTGGCCGAGTCAGGTCCTGGGCTGGCCTTTATCGCATATCCAAAGGCAGTTACTATGATGCCACTGCCCACTTTTTGGGCTATACTCTTTTTCATCATGCTTCTGCTGCTGGGCCTAGACAGTCAGttTGTAGAAGTGGAGGGTCAGATCACCTCACTGGTGGACCTGTACCCATCCCTCCTAAGGAAGGGATACCGGAGAGAGATCTTCATCGCTGTCATCTGTGTCATCAGTTACCTGCTGGGACTCACTATGGTCACTAAAggTGGCATGTATGTGTTCCAGTTGTTTGATTACTATGCAGCCAGCGGTGTGTGCCTTCTCTGGGTTGCATTCTTTGAATGTGTGGCAGTAGCCTGGGTTTATGGCGCTGATAATTTCTACGATGCTATTGAGGACATGATCGGCTACAGACCAAACGGTTGGATGAAGTGGAGCTGGACGCTGATCACGCCTGTCCTGTGTGTGggttgttttgttttctcattgGTGAAATATAAGCCCCTCACCTACAACAAGGTGTACGAATATCCTGATTGGTCGATTGGAGTGGGTTGGTCCCTGGCGTTGGCCTCCATGATCTGCATCCCCATGGTGGTCGTCATCAAAATTATTCAGTCGGACGGCTCACTGATCGAGCGGATCAAGGCTGTGGCCGCCCCGGTGAAAGGAGGTGCCAGCTCCCGTCCCAAAGAGTACAGCCTGAAGAACAGCGAGCTGCTCCACCCACTCGACCCCAACGGCACCTACGCCCTTagcaaacacacccacaccatCGTAGAAACTACAATGTGAGACTCTCTATGAGAGATCCCTATTACCTTtcccctccctcctcctccctccgTCCCCTTCTCTCCTCCTATTCCCATTCCCTTTATACTCCCGCCCCCCCTGTAGCCCCGCCCCCCACCTCTGACCTCCGACCTCCAGCTAGACTGCCCCCTGTTTCTCTGCACTAGTATATTCTAGTTGTATTTTTACAAAAAGAGGTTAACAActcttataataataacaacatccTTTTATTCTCGCTGTTtagaacttttattattctcatTACTGTCGTGGTTttattattgctgttattagaatattttattatcactgtaATCATTGATATTAACGTTAACACTAACGTGTTTGTGGAGGCCGGAATAAGCTTTGCCGTCAATCTTTGCACAggcggagagagagaaagagagaaagagagaaagaaagagagagagagagacagatggaaaTTGTGGATGTATTTTAGGAGTGTTTGAAGCTGAGCCttgtttttaagaaaataacagaaaaaa
>XM_022670872.1
tgcttttattattcttatttttctttcctcGGATTTATAATTTGgagcaaaatagaaaaaaggaaaacaagacaagacTTGAGCAATAAACACAGCTGACAGtaTGGCACAGAAAGAGAAGCTGCAGTGTCTGAAGGATTTCCATAAGGACACTCTGAAGCCATCCCCAGGTAAAAGTCCAGGCACCCGGCCGGAGGATGAGGCCGAGGGGAAGCCTCCACAGAGGGAGAAGTGGGCCAGCAAGCTGGACTTCCTGCTCTCGGTGGCCGGGGGATTCGTAGGTTTAGGCAACGTCTGGCGTTTCCCCTACCTCTGCTACAAGAATGGCGGAGgtGCATTTCTCATCCCCTATTTCATCTTCCTGTTTGGCGGAGGGCTTCCCGTCTTCTTCTTGGAGGTGGCGCTGGGCCAGTTCACCTCAGAGGGAGGAATCACCTGCTGGGAGAAGCTCTGCCCCATCTTCACTGgaaTCGGCTATGCCTCAATCGTGATCGTGTCCCTGCTGAACATCTACTACATTGTGATCCTGGCGTGGGGGCTGTATTAcctgctgcagtgttttcagagGGAGCTGCCGTGGGCTCGCTGCAGGCACAGCTGGAACACACAGAACTGCGTGGAGGACACCATCCGCAAGAACAAAACCCTCTGGCTCTCCGTCAACGCCACCAACTTCACCTCGCCCGTCACCGAGTTCTGGGAGCGTAACGTGCTCAGTCTGTCGTCAGGCATTGATGAGGTGGGCGAGCTGAAGTGGGACCTCGCCCTCTGTCTGCTGGCCGTCTGGGTCATCTGCTTTTTCTGCATCTGGAAAGGAGTGAAATCCACCGGCAAAgTGGTGTATTTCACTGCTACGTTTCCGTTCCTCATGCTCATCGTGTTGTTGGTGCGTGGGGTAACTCTGCCTGGTGCTTCTGAGGGCATCAAGTTCTACCTTTACCCCGACCTGAGCCGCCTGCAGGACCCCGAGgtctGGATTGATGCAGGAACTCAGATCTTTTTCTCTTATGCTATTTGTCTTGGTGCAATGACTTCGCTGGGGAGCTACAATAAGTACAAATATAACTGCTACAGggacTGCATGCTGCTTGGGTGCCTGAACAGCGGGACCAGCTTCGTGTCCGGCTTCGCCATCTTCTCTGTGCTGGGATTTATGGCGCAAGAACAGGGCGTGGCCATCGCTGATGTGGCCGAGTCAGGTCCTGGGCTGGCCTTTATCGCATATCCAAAGGCAGTTACTATGATGCCACTGCCCACTTTTTGGGCTATACTCTTTTTCATCATGCTTCTGCTGCTGGGCCTAGACAGTCAGttTGTAGAAGTGGAGGGTCAGATCACCTCACTGGTGGACCTGTACCCATCCCTCCTAAGGAAGGGATACCGGAGAGAGATCTTCATCGCTGTCATCTGTGTCATCAGTTACCTGCTGGGACTCACTATGGTCACTAAAggTGGCATGTATGTGTTCCAGTTGTTTGATTACTATGCAGCCAGCGGTGTGTGCCTTCTCTGGGTTGCATTCTTTGAATGTGTGGCAGTAGCCTGGGTTTATGGCGCTGATAATTTCTACGATGCTATTGAGGACATGATCGGCTACAGACCAAACGGTTGGATGAAGTGGAGCTGGACGCTGATCACGCCTGTCCTGTGTGTGggttgttttgttttctcattgGTGAAATATAAGCCCCTCACCTACAACAAGGTGTACGAATATCCTGATTGGTCGATTGGAGTGGGTTGGTCCCTGGCGTTGGCCTCCATGATCTGCATCCCCATGGTGGTCGTCATCAAAATTATTCAGTCGGACGGCTCACTGATCGAGCGGATCAAGGCTGTGGCCGCCCCGGTGAAAGGAGGTGCCAGCTCCCGTCCCAAAGAGTACAGCCTGAAGAACAGCGAGCTGCTCCACCCACTCGACCCCAACGGCACCTACGCCCTTagcaaacacacccacaccatCGTAGAAACTACAATGTGAGACTCTCTATGAGAGATCCCTATTACCTTtcccctccctcctcctccctccgTCCCCTTCTCTCCTCCTATTCCCATTCCCTTTATACTCCCGCCCCCCCTGTAGCCCCGCCCCCCACCTCTGACCTCCGACCTCCAGCTAGACTGCCCCCTGTTTCTCTGCACTAGTATATTCTAGTTGTATTTTTACAAAAAGAGGTTAACAActcttataataataacaacatccTTTTATTCTCGCTGTTtagaacttttattattctcatTACTGTCGTGGTTttattattgctgttattagaatattttattatcactgtaATCATTGATATTAACGTTAACACTAACGTGTTTGTGGAGGCCGGAATAAGCTTTGCCGTCAATCTTTGCACAggcggagagagagaaagagagaaagagagaaagaaagagagagagagagacagatggaaaTTGTGGATGTATTTTAGGAGTGTTTGAAGCTGAGCCttgtttttaagaaaataacagaaaaaa

Function

symbol description
slc6a6a Predicted to enable taurine:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport and taurine transport. Predicted to act upstream of or within neurotransmitter transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A6 (solute carrier family 6 member 6).

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function
GO:0005369 taurine molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81703 True 3624 lncRNA 0.33 2 51539498 51580634
XM_022670871.1 False 2715 mRNA 0.50 15 51543106 51577160
XM_022670872.1 False 2493 mRNA 0.50 14 51543106 51577160

Neighbor

gene id symbol gene type direction distance location
LOC103032967 LOC108441106 coding downstream 63650 51459436 ~ 51475848 (-)
LOC111192719 NA coding downstream 78759 51446199 ~ 51460739 (-)
LOC103030869 LOC108440552,LOC108265824 coding downstream 253329 51276303 ~ 51286169 (-)
fgd1 fgd1,LOC107552218,LOC108266043 coding downstream 266767 51216841 ~ 51272731 (-)
LOC103044996 prkcz,LOC107743854,LOC107710919 coding downstream 802246 50657611 ~ 50737252 (-)
abtb1 abtb1,LOC107674366,LOC107696919 coding upstream 21678 51602312 ~ 51616374 (-)
LOC103034245 LOC103034245,LOC105899047,LOC108441101,LOC101487991,LOC107653429 coding upstream 76767 51657401 ~ 51662840 (-)
slc6a8 slc6a8,LOC103036862,LOC108441094,LOC107734513,LOC105006658 coding upstream 322590 51903224 ~ 51973896 (-)
LOC103025058 LOC108440549 coding upstream 468992 52049626 ~ 52063200 (-)
LOC103025375 srpk3,LOC107743111,LOC107601770,LOC107727421 coding upstream 551297 52131931 ~ 52153152 (-)
G60594 NA non-coding downstream 3186 51534478 ~ 51536312 (-)
G60571 NA non-coding downstream 96646 51364322 ~ 51442852 (-)
G60584 lhfpl4b,LOC103032126,LOC108440531,LOC107584928,LOC107727430,LOC107674308,LOC105898894 non-coding downstream 126351 51410604 ~ 51413147 (-)
G60566 NA non-coding downstream 130236 51342696 ~ 51409262 (-)
G60570 NA non-coding downstream 179331 51358476 ~ 51360167 (-)
G60619 NA non-coding upstream 64587 51645221 ~ 51647695 (-)
G60628 NA non-coding upstream 131983 51712617 ~ 51713092 (-)
G60629 NA non-coding upstream 132553 51713187 ~ 51714166 (-)
G60736 NA non-coding upstream 184482 51765116 ~ 51765779 (-)
G60739 NA non-coding upstream 266151 51846785 ~ 51848839 (-)
LOC103032656 LOC108413501 other downstream 30918 51416220 ~ 51508580 (-)
G60441 NA other downstream 707298 50827695 ~ 50832200 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other downstream 909334 50565289 ~ 50630164 (-)
G59951 NA other downstream 2234246 49304608 ~ 49305252 (-)
LOC103030200 cacna1e,LOC108265205,LOC108265123,LOC108265206 other downstream 2347473 49062519 ~ 49192025 (-)
G60627 NA other upstream 125704 51706338 ~ 51708112 (-)
LOC103028851 LOC108440537,LOC107674333,LOC108265526,LOC107584878,LOC107727418,LOC107743115 other upstream 903795 52484429 ~ 52524184 (-)

Expression


Co-expression Network