G60629


Basic Information

Item Value
gene id G60629
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51713187 ~ 51714166 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU81748
ctctctttccaGTAAATATATTtggacagttaaaaaaaataaaagcccctCCGTCCCTTTTTCTAAATAAACTcccagagagggagagagtgaccCTCGTCTGGGAAAGGGAGTCCAGGCTACAGATCTGAAATCCAGGTCCTCTACTCGGTCAGGACTAGCACTACAGAAAGTTCTCTTTTCCCCttttacacaaataataaaCGTGTAGCGCAAGACTTCCCAGCacattactgaatactgaaccATACGATAGTAGTTCCCACATGACATATCAGAGAGAAGAATCAAGTGAAGAGACACCTGACGACAGCAGAAATTACTGGGTGTTtcagtaactttttaaaaagacacGAATAAAACGAGGCAAGAAGGATCATCTTAACAGTTTTGAGCCACCTGCACTTTCACTCGGCTACCTCAGGTCCGGATCTCCAACCCAAACCGCCCTTTCCTCAGCTCTCAATAAGCAAAAAACAGCGTTCAGCAGTAACTTGGATCTCACAGCTCATGGCAAAATTGATAACGTCAATCTGTGCTGGTATATAaagcagaaacaaacaaacctaCATCCCAATAAAGTGGTCCCAAACCTGCAGGACTGcctgtttctccctctgtgatcatatcaattatttaataaatggcttttgtgtgtatgtgtgtatgtatatgtgtgtgtgtgcatgtgtgtgtatatatatctgtgtgtgtatatatgtctgtgtgtgtataagtaaCACATGTCCCCACTTGCataaaggttaaaataacaaCGACATATATATAAGCACATGCTGGTCATAGCTTACAATTATAGCTTTCTTTGCACAATTAAAACTTGCACAAGTAcaatttttgcacacttttggtTCGGGGAaagaaaacatttacaaaaaaacagagcaaggaATTTTCTTTAAacgttacatttcttttaaagatGCACACGATACATCCCGATAAACGGAAAACTGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81748 True 980 lncRNA 0.40 1 51713187 51714166

Neighbor

gene id symbol gene type direction distance location
LOC103034245 LOC103034245,LOC105899047,LOC108441101,LOC101487991,LOC107653429 coding downstream 50347 51657401 ~ 51662840 (-)
abtb1 abtb1,LOC107674366,LOC107696919 coding downstream 96813 51602312 ~ 51616374 (-)
LOC103032967 LOC108441106 coding downstream 237339 51459436 ~ 51475848 (-)
LOC111192719 NA coding downstream 252448 51446199 ~ 51460739 (-)
LOC103030869 LOC108440552,LOC108265824 coding downstream 427018 51276303 ~ 51286169 (-)
slc6a8 slc6a8,LOC103036862,LOC108441094,LOC107734513,LOC105006658 coding upstream 189058 51903224 ~ 51973896 (-)
LOC103025058 LOC108440549 coding upstream 335460 52049626 ~ 52063200 (-)
LOC103025375 srpk3,LOC107743111,LOC107601770,LOC107727421 coding upstream 417765 52131931 ~ 52153152 (-)
plxnb3 plxnb3,LOC108265307,LOC107727420,LOC107674349,LOC107701812,LOC107584917 coding upstream 444396 52158562 ~ 52307803 (-)
LOC103026406 abcd1,LOC108265308,LOC108440542,LOC107674359,LOC107701814,LOC107727428,LOC107552221,LOC107743108 coding upstream 596163 52310329 ~ 52333085 (-)
G60628 NA non-coding downstream 95 51712617 ~ 51713092 (-)
G60619 NA non-coding downstream 65492 51645221 ~ 51647695 (-)
G60594 NA non-coding downstream 176875 51534478 ~ 51536312 (-)
G60571 NA non-coding downstream 270335 51364322 ~ 51442852 (-)
G60584 lhfpl4b,LOC103032126,LOC108440531,LOC107584928,LOC107727430,LOC107674308,LOC105898894 non-coding downstream 300040 51410604 ~ 51413147 (-)
G60736 NA non-coding upstream 50950 51765116 ~ 51765779 (-)
G60739 NA non-coding upstream 132619 51846785 ~ 51848839 (-)
G60752 NA non-coding upstream 135461 51849627 ~ 51850048 (-)
G60753 NA non-coding upstream 136223 51850389 ~ 51851299 (-)
G60747 NA non-coding upstream 171397 51885563 ~ 51900112 (-)
G60627 NA other downstream 5075 51706338 ~ 51708112 (-)
LOC103045940 slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205 other downstream 132553 51539498 ~ 51580634 (-)
LOC103032656 LOC108413501 other downstream 204607 51416220 ~ 51508580 (-)
G60441 NA other downstream 880987 50827695 ~ 50832200 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other downstream 1083023 50565289 ~ 50630164 (-)
LOC103028851 LOC108440537,LOC107674333,LOC108265526,LOC107584878,LOC107727418,LOC107743115 other upstream 770263 52484429 ~ 52524184 (-)

Expression


Co-expression Network