abtb1 (abtb1,LOC107674366,LOC107696919)


Basic Information

Item Value
gene id abtb1
gene name abtb1,LOC107674366,LOC107696919
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51602312 ~ 51616374 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670873.1
ATGGACGCAAACGATCTGTTTTCGAGCTGCAGGAAGGGCGACGTTGCGAGAGTGAGATACCTGGTTGAACAGAGAGATGTGGAATTGAACGTGAGAGATAAATGGGACAGTACACCTCTGTACTATGCGTGCCTCTGCGGACACGAGGAGTTGGTGCAGTATCTACTGGCCAATGGAGCGAAATGCGAGGCGAATACGTTTGATGGCGAGCGATGTCTGTACGGAGCTCTGAGCGACTCCATCCGCCGCCTGCTGAAGGAGTACAAGCGCATCACAGCTAAAGCAATGCAGAGAGACTACTACGAGCACTTCCTGCAGACGCTGCTGGAACAGGGCTCGTACAGTGATGTGATGTTCATGGTGCATGGCGAGATGTTCCGGACGCACCGCTGTGTTCTCAGCGCCCGCTCCGAGTACTTTGCCCACATGCTGGAGACTAAATGGAGGGGCAAGACTATGATAGCTCTCAAACATCCACTGgtAAACCCTGCTGCATTCGCTGCACTCCTACAGTACTTCTACACTGGTCGATTGGATATAGATATGAGCTATGTGGAGGACTGCAAGCGCCTGGCAAAGCAGTGCAAAATCAGCGAGCTGATCGAGGAGCTGGAGGTCAAGTGCAAGCAGGTGCAAGAGTTTGTGTCCAATAAGCCGGGGACATGTGTGAAGGTGCTGACACTGGACCCTCATGATTGGCAGCTGCAGGATGGCATGGCTCTGTTAGCAGATAGTGCTCTTCCAGCTGAACTGAGAGTTGGGTATGGACAGCTTCCTTTCGATCTTACTGACAGCTTCCCAAGCTATCCCGACATCTGCTTCCGGGTGGATGGTTATGACTTCCTGTGTCATAAGGCATTTTTCTGTGGGCGAAGtgattattttaaagcattagtgGAGGATCATTTCAGTGAAGGCGAAACCCTGCAGTCTCTCCCTGGAGTTCCTGTTATCACCTTACATGACGTTTCTCATGACCTTTTCACCAGAATCCTGTACTACATATACAGTGATAACACACAGCTCTCCCATGATAATGTGTATGAGGTGCTGTGTGTGGCGGATATGTACCTGCTGCCCGGTCTGAAGCGTCTGTGCGGCCGGACGCTGGCGGCGCTGCTGAGTGAAGAGAACGTTTTACACATGTGGAAAACAGCCAAACTCTTCAGCCTGTCTCGTCTTGAGGACCAGTGCACCGAGTTCATGGCCAAGATCATTGAGAGGCTGGTGGAGAGGGCGGAGTTTGCCGAGGTGATCAGAGAGGATGCTGGGAGTGTGGCCGCCCGACAGGAGACGGACTCCATCCCCCTGGTGGACGAAATCCGCTACCACATTAGCAGCAACGTTCAGACATACAGCGCCATAGAGGAAGCCAACCAGAAACTCCACGCCCTCGAGCTGCTGCTCAACTACATCGGCCTGGACTGCTGAGGAGAGacggggggagagagagagagtgaaaaagagagagagagagagaaagagagagagagataagagggCAGAGAGTGCAAGATAAGTGGAGAGATACAGGAGGGGGATGGTTGGAAAGAAGGACAGTGAAAGAAAGAGTAGAAatgaggatgtgtgtgtgtttgtgtgaacttgtgtgtgtgtgtgtatgtgtgtgtgtctcggcATTCTTCaccatataaatatatgaaatacaaaaatatatatatattaattatttaattgctTGCTTTAACACACCAGAAATAAACAGGCTCACTCAGTAATGGGCTATTTTAAATCACAACAGCTTTCCAGATTTTTACTTATCTCAGTCTCATATTCAGTTAcagcttaaacacacacacacacacacacacatatatatatatacaccaatcagccactTCATTAACACTACCTCCTTCTTTCTACATTCACTGTCCATTAGATCAGCTCCGCTTAGTTCTATCTGTATctatttctctgtatactttattattatcctcctttcatcctgtttcaccattttcagcactgcactgacatTAACATGCTGTGTTAGTAGCGTGTGTTTTGCTGGTACGTGTGTTGGATCAGATGcaacagtgctgctggagtttttaaacactgttttttaatcactctCTGTCTTCCACTCTATATTAGACGCTCCTACatacagctgctccaccttgtagataaagtaaagtcagagacagaagctctgaatctgttgctgcacagcttTTTGtatgttggtcatcctctattCCTACATTAATGGATACAGGACGTTAACAGGCTGTTAGCTGggtatttctggttggtggactattctcaatccagcagtgacactgagaataagtttaaaaacaccagcagcactgctgtatctgatgcACTTATACCAGCAGTCCACACACTAAAGGCTGTAACACACTGGTATTTTCAGTATTACATTTAGAGTATCATCACAGctcactcagaggaaagtgcagcgactcagttctgatacaacagctcacagacgcagccttgtgctgatccacatcacccagggagtgatgaggggaacaGTGCCATCTATTGtttccacccagagagagcaaggacagtTGTGCTCCCTCGGGACTCCGgcagatgatggcaagctgcatgacagggattcgaaGCAGTGATTCGAAgcagtgatctcccgatcatagtggcagctcctTAGTCTGCTGAACCAATCAGAGCCCAgaacttttatatttaaaagaaacGTCACATCTTGCTCACAAGAAACTCTCTTGTGGGTGATAGATGaggaaaattattaaataataaataatctagACATCAGGAAATGTGCTTCTACTGTCACTGCAGAGCTGAAAATAATGATCTGCTCTGTcgtggtctatcctgtgggatcctgaccattaaagaacagacAGGGTGATGGTGGGGgggataataaataataaagataataaagtgTGCAGAggaacagatacaggactacagtctgtaattattacagAACTTCAGCGTGATCCTATATGATTAGTGCAGTTGTTGCAATGTCCATTgaatgtagaaacaaggaggtggatgatctgtgtgtatacacacacacacacacacacacacacacacatgcacaagcacacacacagacagataaatgcagtaatagtgctggtgtgaattGCATTGAACTAAAAGAACCTCTTGTCTCTAGTTTACTGCTCATTATTGCTTTGgattattttgttcttttgagaaaaaaaaaagttttccttACACAATTTTGattttagtatatatttagaatatatGTTGATGTAAACCTTATTTTACAGTCATAACTGCCCTTTATTATGCAGCTCAACCAGCAGAAGTTTAGCAGAAGTGCTTCCATACCTTTTTGTAGTTATGATCCTGATGCAGTCAAAAAGAGCATGGCTCATCCGTGGattttactaattactaatataaGAACTGagctttcttattatttcttatttaagcAGAGAAGTTTATTGGGTTATCgaatttattgtgtttaatattataatagatTTATATgtttaaggaaaaaaagaaaagagatgtataaaaaagaaatgatttAAAGATTGAATCGAGGTTTCGAGGtctgttgtttgttttagcTGGACTGCTCTGCTGCGCGAATGCGTGTAATGAATTGCGCGAGTGTTGGGCTGTAATGggctgtaatgct

Function

symbol description
abtb1 Orthologous to human ABTB1 (ankyrin repeat and BTB domain containing 1).

NR:

description
ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X2

GO: NA

KEGG:

id description
K10520 ABTB1, BPOZ; ankyrin repeat and BTB/POZ domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670873.1 True 3685 mRNA 0.44 12 51602312 51616374

Neighbor

gene id symbol gene type direction distance location
LOC103032967 LOC108441106 coding downstream 126464 51459436 ~ 51475848 (-)
LOC111192719 NA coding downstream 141573 51446199 ~ 51460739 (-)
LOC103030869 LOC108440552,LOC108265824 coding downstream 316143 51276303 ~ 51286169 (-)
fgd1 fgd1,LOC107552218,LOC108266043 coding downstream 329581 51216841 ~ 51272731 (-)
LOC103044996 prkcz,LOC107743854,LOC107710919 coding downstream 865060 50657611 ~ 50737252 (-)
LOC103034245 LOC103034245,LOC105899047,LOC108441101,LOC101487991,LOC107653429 coding upstream 41027 51657401 ~ 51662840 (-)
slc6a8 slc6a8,LOC103036862,LOC108441094,LOC107734513,LOC105006658 coding upstream 286850 51903224 ~ 51973896 (-)
LOC103025058 LOC108440549 coding upstream 433252 52049626 ~ 52063200 (-)
LOC103025375 srpk3,LOC107743111,LOC107601770,LOC107727421 coding upstream 515557 52131931 ~ 52153152 (-)
plxnb3 plxnb3,LOC108265307,LOC107727420,LOC107674349,LOC107701812,LOC107584917 coding upstream 542188 52158562 ~ 52307803 (-)
G60594 NA non-coding downstream 66000 51534478 ~ 51536312 (-)
G60571 NA non-coding downstream 159460 51364322 ~ 51442852 (-)
G60584 lhfpl4b,LOC103032126,LOC108440531,LOC107584928,LOC107727430,LOC107674308,LOC105898894 non-coding downstream 189165 51410604 ~ 51413147 (-)
G60566 NA non-coding downstream 193050 51342696 ~ 51409262 (-)
G60570 NA non-coding downstream 242145 51358476 ~ 51360167 (-)
G60619 NA non-coding upstream 28847 51645221 ~ 51647695 (-)
G60628 NA non-coding upstream 96243 51712617 ~ 51713092 (-)
G60629 NA non-coding upstream 96813 51713187 ~ 51714166 (-)
G60736 NA non-coding upstream 148742 51765116 ~ 51765779 (-)
G60739 NA non-coding upstream 230411 51846785 ~ 51848839 (-)
LOC103045940 slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205 other downstream 21678 51539498 ~ 51580634 (-)
LOC103032656 LOC108413501 other downstream 93732 51416220 ~ 51508580 (-)
G60441 NA other downstream 770112 50827695 ~ 50832200 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other downstream 972148 50565289 ~ 50630164 (-)
G59951 NA other downstream 2297060 49304608 ~ 49305252 (-)
G60627 NA other upstream 89964 51706338 ~ 51708112 (-)
LOC103028851 LOC108440537,LOC107674333,LOC108265526,LOC107584878,LOC107727418,LOC107743115 other upstream 868055 52484429 ~ 52524184 (-)

Expression


Co-expression Network