G60594


Basic Information

Item Value
gene id G60594
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51534478 ~ 51536312 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU81707
ttttctttctttattttcctaataaaaaaaagggaaacatttaaacatttaaaaagttttccATGACTAAAATCGATCATTTACATCTTATCTGGCATAACACTTGACATCATCACTGGTCGAAACTGCCACGAGCGTAGTTACAGAAGACGTACACAGCAGAGGAATGTGGGTAAAAACATTCATTGAATGGGTTAAAACTTGACGTCCCctcttttcttatttaaaagaacattaaaagaGCCTTTTAGGGGACTTCAGTCTTCAGATCACAGAAGATGCTTAtctgtaataaaattaaaacaaaataaatagcaGAACTCTATCTACATCCTCTAGTTTTTTTATCCTCGTAGGGTTTACATTATGAGACGTTATGTTATGGATGATGTTCTGGATGACGTTCCTTACAGCATCATTCAACAGTCGCATGAGTGCCTTTCTATACACACATTAAGCCCCAgtttaaatgggttttaaaGTAGGTTACAGTGTCAGAATAAAGGGATATGCACTACAAACCATGTCATTTCAGGACCTGGATTAATCTCTGTGTGGAAAAACAAACCCCCACCTTTAAAAATGACTCAGGAGAGAACCGCTCAACCAGTGCAATCCAATGCAACGGTCATTAACCTTCAAAAGCTGCAACACGCAAAAATTAAGCTTTGTTTTTGAGTCGAGGGAAGTGGAAAAAAACTGCGCCTCCTGATTTGGCCATTGTGTGCTGTTGGTCCCCAGTGAGCGAGAGCAAGAGTTTCATCATCACTGCACACAAcatggagagtgtgtgtgtgtgtgtgtgtgtttgggggagtgtgtgtacatgtgtgtctgtctctctttttctttctctctctctctctgtttgtgctTTAGAACCTCATATACATGTGCATATGCAAATAAACCTACAAGGAGAAGTACAAGAGTGTGCTTATATATTTGcacgtgtgtgtctgtgtgtgtctatgtatgCACTAAAACAGTGAGGGAAAATAAAGTGCTTAAATTCTGATCCCATCaaaattattcattcattcattaattttgttatattaaatgtgttatactaatgctatatatataaaaaaataaacatatatttatgtagTGTGAGAAccaatgtgtggtgtgtgggtgtggcttATGCTCAGGGGAgggatttatttaatttaaaaaaattatgaaaaaaattatgaaaaacaaaaaaaaaagtaaaaaaaaaaaaaaaaactttgtggatttatatgtgtttgtgtgttgtggtcataaacaaaataataacaataataaaaaaaaaagattagtaaTGGCCACTTTTGAggaaaataatatagaaaaacaattggtggtgtgtgtgttgtaagtgGTTGTGTACCATCCCTGTTAACATCcttgtgtgcgtttgtgtgtgtcttgtgcgcttgtgtttttgtgaaagagggaaagagaaaaagagagaaatagagagagcgagagaaagagagagcgaaagagtgAAAGACAGGTCTTCCCCCTGCAGTAAACAGTCAGTGTCTCTGTATTCTTTGCTGTATTaagggtcagaggtcagaggtcagtgTTCAGGCTGTGTTCAGGGAGAGCGATCAGCGTGTCTGAAAGCTGCAGGACGTCTCGAGCTGGACTCAGAACAGTCTGGGCGAGGGGGTTCCTGCTGATGACCAGCTGGAGCTGATCTACTGCCTCGGACATCAGCGGCACGGCCAAGCAGCAGTCGAAATCCCGCGTCCTCACATGAttcacctgagagagagagagagagagagaaagaagatgcCTAAGCTCAC
>TU81708
ttttctttctttattttcctaataaaaaaaagggaaacatttaaacatttaaaaagttttccATGACTAAAATCGATCATTTACATCTTATCTGGCATAACACTTGACATCATCACTGGTCGAAACTGCCACGAGCGTAGTTACAGAAGACGTACACAGCAGAGGAATGTGGGTAAAAACATTCATTGAATGGGTTAAAACTTGACGTCCCctcttttcttatttaaaagaacattaaaagaGCCTTTTAGGGGACTTCAGTCTTCAGATCACAGAAGATGCTTAtctgtaataaaattaaaacaaaataaatagcaGAACTCTATCTACATCCTCTAGTTTTTTTATCCTCGTAGGGTTTACATTATGAGACGTTATGTTATGGATGATGTTCTGGATGACGTTCCTTACAGCATCATTCAACAGTCGCATGAGTGCCTTTCTATACACACATTAAGCCCCAgtttaaatgggttttaaaGTAGGTTACAGTGTCAGAATAAAGGGATATGCACTACAAACCATGTCATTTCAGGACCTGGATTAATCTCTGTGTGGAAAAACAAACCCCCACCTTTAAAAATGACTCAGGAGAGAACCGCTCAACCAGTGCAATCCAATGCAACGGTCATTAACCTTCAAAAGCTGCAACACGCAAAAATTAAGCTTTGTTTTTGAGTCGAGGGAAGTGGAAAAAAACTGCGCCTCCTGATTTGGCCATTGTGTGCTGTTGGTCCCCAGTGAGCGAGAGCAAGAGTTTCATCATCACTGCACACAAcatggagagtgtgtgtgtgtgtgtgtgtgtttgggggagtgtgtgtacatgtgtgtctgtctctctttttctttctctctctctctctgtttgtgctTTAGAACCTCATATACATGTGCATATGCAAATAAACCTACAAGGAGAAGTACAAGAGTGTGCTTATATATTTGcacgtgtgtgtctgtgtgtgtctatgtatgCACTAAAACAGTGAGGGAAAATAAAGTGCTTAAATTCTGATCCCATCaaaattattcattcattcattaattttgttatattaaatgtgttatactaatgctatatatataaaaaaataaacatatatttatgtagTGTGAGAAccaatgtgtggtgtgtgggtgtggcttATGCTCAGGGGAgggatttatttaatttaaaaaaattatgaaaaaaattatgaaaaacaaaaaaaaaagtaaaaaaaaaaaaaaaaactttgtggatttatatgtgtttgtgtgttgtggtcataaacaaaataataacaataataaaaaaaaaagattagtaaTGGCCACTTTTGAggaaaataatatagaaaaacaattggtggtgtgtgtgttgtaagtgGTTGTGTACCATCCCTGTTAACATCcttgtgtgcgtttgtgtgtgtcttgtgcgcttgtgtttttgtgaaagagggaaagagaaaaagagagaaatagagagagcgagagaaagagagagcgaaagagtgAAAGACAGGTCTTCCCCCTGCAGTAAACAGTCAGTGTCTCTGTATTCTTTGCTGTATTaagggtcagaggtcagaggtcagtgTTCAGGCTGTGTTCAGGGAGAGCGATCAGCGTGTCTGAAAGCTGCAGGACGTCTCGAGCTGGACTCAGAACAGTCTGGGCGAGGGGGTTCCTGCTGATGACCAGCTGGAGCTGATCTACTGCCTCGGACATCAGCGGCACGGCCAAGCAGCAGTCGAAATCCCGCGTCCTCACATGAttcacctgagagagagagagagagagagagaaagaagatgcCTAAGCTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81707 False 1811 lncRNA 0.39 2 51534478 51536312
TU81708 True 1813 lncRNA 0.39 2 51534478 51536312

Neighbor

gene id symbol gene type direction distance location
LOC103032967 LOC108441106 coding downstream 58630 51459436 ~ 51475848 (-)
LOC111192719 NA coding downstream 73739 51446199 ~ 51460739 (-)
LOC103030869 LOC108440552,LOC108265824 coding downstream 248309 51276303 ~ 51286169 (-)
fgd1 fgd1,LOC107552218,LOC108266043 coding downstream 261747 51216841 ~ 51272731 (-)
LOC103044996 prkcz,LOC107743854,LOC107710919 coding downstream 797226 50657611 ~ 50737252 (-)
abtb1 abtb1,LOC107674366,LOC107696919 coding upstream 66000 51602312 ~ 51616374 (-)
LOC103034245 LOC103034245,LOC105899047,LOC108441101,LOC101487991,LOC107653429 coding upstream 121089 51657401 ~ 51662840 (-)
slc6a8 slc6a8,LOC103036862,LOC108441094,LOC107734513,LOC105006658 coding upstream 366912 51903224 ~ 51973896 (-)
LOC103025058 LOC108440549 coding upstream 513314 52049626 ~ 52063200 (-)
LOC103025375 srpk3,LOC107743111,LOC107601770,LOC107727421 coding upstream 595619 52131931 ~ 52153152 (-)
G60571 NA non-coding downstream 91626 51364322 ~ 51442852 (-)
G60584 lhfpl4b,LOC103032126,LOC108440531,LOC107584928,LOC107727430,LOC107674308,LOC105898894 non-coding downstream 121331 51410604 ~ 51413147 (-)
G60566 NA non-coding downstream 125216 51342696 ~ 51409262 (-)
G60554 NA non-coding downstream 156335 51306688 ~ 51378143 (-)
G60570 NA non-coding downstream 174311 51358476 ~ 51360167 (-)
G60619 NA non-coding upstream 108909 51645221 ~ 51647695 (-)
G60628 NA non-coding upstream 176305 51712617 ~ 51713092 (-)
G60629 NA non-coding upstream 176875 51713187 ~ 51714166 (-)
G60736 NA non-coding upstream 228804 51765116 ~ 51765779 (-)
G60739 NA non-coding upstream 310473 51846785 ~ 51848839 (-)
LOC103032656 LOC108413501 other downstream 25898 51416220 ~ 51508580 (-)
G60441 NA other downstream 702278 50827695 ~ 50832200 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other downstream 904314 50565289 ~ 50630164 (-)
G59951 NA other downstream 2229226 49304608 ~ 49305252 (-)
LOC103030200 cacna1e,LOC108265205,LOC108265123,LOC108265206 other downstream 2342453 49062519 ~ 49192025 (-)
LOC103045940 slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205 other upstream 3186 51539498 ~ 51580634 (-)
G60627 NA other upstream 170026 51706338 ~ 51708112 (-)
LOC103028851 LOC108440537,LOC107674333,LOC108265526,LOC107584878,LOC107727418,LOC107743115 other upstream 948117 52484429 ~ 52524184 (-)

Expression


Co-expression Network