RNA id: TU81708


Basic Information

Item Value
RNA id TU81708
length 1813
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G60594
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51534478 ~ 51536312 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttctttctttattttcctaataaaaaaaagggaaacatttaaacatttaaaaagttttccATGACTAAAATCGATCATTTACATCTTATCTGGCATAACACTTGACATCATCACTGGTCGAAACTGCCACGAGCGTAGTTACAGAAGACGTACACAGCAGAGGAATGTGGGTAAAAACATTCATTGAATGGGTTAAAACTTGACGTCCCctcttttcttatttaaaagaacattaaaagaGCCTTTTAGGGGACTTCAGTCTTCAGATCACAGAAGATGCTTAtctgtaataaaattaaaacaaaataaatagcaGAACTCTATCTACATCCTCTAGTTTTTTTATCCTCGTAGGGTTTACATTATGAGACGTTATGTTATGGATGATGTTCTGGATGACGTTCCTTACAGCATCATTCAACAGTCGCATGAGTGCCTTTCTATACACACATTAAGCCCCAgtttaaatgggttttaaaGTAGGTTACAGTGTCAGAATAAAGGGATATGCACTACAAACCATGTCATTTCAGGACCTGGATTAATCTCTGTGTGGAAAAACAAACCCCCACCTTTAAAAATGACTCAGGAGAGAACCGCTCAACCAGTGCAATCCAATGCAACGGTCATTAACCTTCAAAAGCTGCAACACGCAAAAATTAAGCTTTGTTTTTGAGTCGAGGGAAGTGGAAAAAAACTGCGCCTCCTGATTTGGCCATTGTGTGCTGTTGGTCCCCAGTGAGCGAGAGCAAGAGTTTCATCATCACTGCACACAAcatggagagtgtgtgtgtgtgtgtgtgtgtttgggggagtgtgtgtacatgtgtgtctgtctctctttttctttctctctctctctctgtttgtgctTTAGAACCTCATATACATGTGCATATGCAAATAAACCTACAAGGAGAAGTACAAGAGTGTGCTTATATATTTGcacgtgtgtgtctgtgtgtgtctatgtatgCACTAAAACAGTGAGGGAAAATAAAGTGCTTAAATTCTGATCCCATCaaaattattcattcattcattaattttgttatattaaatgtgttatactaatgctatatatataaaaaaataaacatatatttatgtagTGTGAGAAccaatgtgtggtgtgtgggtgtggcttATGCTCAGGGGAgggatttatttaatttaaaaaaattatgaaaaaaattatgaaaaacaaaaaaaaaagtaaaaaaaaaaaaaaaaactttgtggatttatatgtgtttgtgtgttgtggtcataaacaaaataataacaataataaaaaaaaaagattagtaaTGGCCACTTTTGAggaaaataatatagaaaaacaattggtggtgtgtgtgttgtaagtgGTTGTGTACCATCCCTGTTAACATCcttgtgtgcgtttgtgtgtgtcttgtgcgcttgtgtttttgtgaaagagggaaagagaaaaagagagaaatagagagagcgagagaaagagagagcgaaagagtgAAAGACAGGTCTTCCCCCTGCAGTAAACAGTCAGTGTCTCTGTATTCTTTGCTGTATTaagggtcagaggtcagaggtcagtgTTCAGGCTGTGTTCAGGGAGAGCGATCAGCGTGTCTGAAAGCTGCAGGACGTCTCGAGCTGGACTCAGAACAGTCTGGGCGAGGGGGTTCCTGCTGATGACCAGCTGGAGCTGATCTACTGCCTCGGACATCAGCGGCACGGCCAAGCAGCAGTCGAAATCCCGCGTCCTCACATGAttcacctgagagagagagagagagagagagaaagaagatgcCTAAGCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81681 lncRNA downstream 25898 51421171 ~ 51508580 (-) True LOC103032656
TU81661 lncRNA downstream 91626 51364322 ~ 51442852 (-) True G60571
TU81675 lncRNA downstream 121331 51410604 ~ 51413147 (-) True G60584
TU81659 lncRNA downstream 174311 51358476 ~ 51360167 (-) True G60570
TU81641 lncRNA downstream 186415 51347275 ~ 51348063 (-) True G60556
TU81703 lncRNA upstream 3186 51539498 ~ 51580634 (-) True LOC103045940
TU81735 lncRNA upstream 108909 51645221 ~ 51647695 (-) True G60619
TU81738 lncRNA upstream 110536 51646848 ~ 51647695 (-) False G60619
TU81747 lncRNA upstream 176305 51712617 ~ 51713092 (-) True G60628
TU81748 lncRNA upstream 176875 51713187 ~ 51714166 (-) True G60629
XM_007245843.3 mRNA downstream 58630 51459436 ~ 51475848 (-) True LOC103032967
XM_022670869.1 mRNA downstream 62620 51461093 ~ 51471858 (-) False LOC103032967
XM_022670942.1 mRNA downstream 73739 51446199 ~ 51460739 (-) True LOC111192719
XM_022670868.1 mRNA downstream 89821 51416220 ~ 51444657 (-) False LOC103032656
XM_022670872.1 mRNA upstream 6794 51543106 ~ 51577160 (-) False LOC103045940
XM_022670871.1 mRNA upstream 6794 51543106 ~ 51577160 (-) False LOC103045940
XM_022670873.1 mRNA upstream 66000 51602312 ~ 51616374 (-) True abtb1
XM_007245847.3 mRNA upstream 121089 51657401 ~ 51662840 (-) True LOC103034245
XM_007245855.3 mRNA upstream 366912 51903224 ~ 51973896 (-) True slc6a8
TU81451 other downstream 702278 50827695 ~ 50832200 (-) True G60441
TU80777 other downstream 2229226 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 2450545 49062621 ~ 49083933 (-) False LOC103030200
TU80460 other downstream 3615097 47816355 ~ 47919381 (-) False selenok
TU81746 other upstream 170026 51706338 ~ 51708112 (-) True G60627

Expression Profile