RNA id: TU81661


Basic Information

Item Value
RNA id TU81661
length 2887
lncRNA type sense_over
GC content 0.33
exon number 3
gene id G60571
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51364322 ~ 51442852 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATTGATGGAAATGAGCATGATACAGAATcttgatataaataaagtaacaaggattttttttttattagagagAATCAAACATAGGGCGGATGTTTATGGTAAAAACAAGCAAAGGAAATATTTAGTTTATGgcgagagtttttttttttattagagagAATCGAACATAGGGATGATGTTTCATGAATAGAGTGGACATAGGAcagatgtttattaaaaaacaagcaaaggGAAGATGTTTAAGGAGAGAATCAAACATTGGGCAGATGTTTATGGAGAGAAATTAACATAGGGCAGAAGTTTATGGTAAAAAGAAGCAAAGAAAGGATGTTTATGGAGAAAATCGAACATAGGTCAgatgttttttggtaaaaacaagcaaagaaaGGATGTTTATGAAGAAAATTGAACATAGGGCAGATGTTTATGGAGAGAATTGAACATAGGGCAGATGTTTATGGtaaaaacaagcaaagaaaGGATGTTTATGAAGAGAATTGGACATAGGGCAGATGTTTATGGAGAGAAATGAACATAGAGCAGATATTTATGGTAAAAACAAGCAAAGGAAGGATGTTTAAGGAGAGAATTGAACATAGGGCTGATGTTTGAGGATGGAAACCAACATGGGACAGATGTTAATATAGAGAAACAAGCATAGGGCAGATGTTTATGGAGAGAATGGAACATGGAAACACATTGGACATATGCATATATAGAGAAAACAAACATAAGGCCGATGTTTTTGAAGAGAATCGAACATAGGGCAGATGTCTATGGAAAGAAATGAACATATGGCAGATAATTATGTATGGAAACAGGCATGGAACAGATAATAATACAGAGAAACAAACATAAGTCAGATATTTATGAAAACAATTGAACATAGGTCAGATGTTTATGGAGGAGAATTACCATAGGTCAGATGTTTATGGAGAGAATCAAACATACAGCAGATATTTATGAAAAGAATTGAATATGGGAAAGATATTTATGGAGATAATTTAAGGGCAGGTGTTAATATAGAGAAACAAACATAGGGCAGATGTTTGTGAAAAGAATTGAATATAGAAAAAATGTTTATGGAGAGAATCAAACATAGAGCAGATAGTTATGAAGAGAATTGAACATGAGACAGATGTTTATTAATGGAAACTGACATGGGACAAATGTTAATATAGAGAAACAAACATTTAGCATACGTTAATTGTAATATGTGTATTGTAAGTTACTGTAATGACTTGTTATTCTGAATTGGAATTGGAACATTTCTGTGTTGAGTGTATTAAGCTGTTATTCAGCGTCATTctggaacatttctattggtaccttaattttaaaatgttcaaataatgtaaattacTGCAAGAAAAAACCCTAAAATTTAAGTAAAACAGGGTTTTGTTAGGATGGCGATCAGTAAGATCATCTCTAGGGTTTGCAGTAATCAGTAATAACGTGTCACTGTCTGCTGAGCTCGTATGTGATTTACAGGTACTGCAGGAGGGCTGAGTGAACTGACCTGCATTCATTACCAGGGAGCCGTGTTACACAGTGCAGCTCTGTTCACTCatacatcatcattattattataataattataataataataattattatattctaGAAAGTTCTGGGAGAAGCAGAGGCTAAACCTCCTCAGCAACAGAGTAAAGAGACACGTCAAACAAGAGTCTGGTCTATATTTAGTAGCTATTAATTTATTAGAGTTAAGGTCAAAGGTCAAGACTGCACTTAAAGAATAAACCGGGGGGAGGAGGTAAGGGTCTTGTTTGACGTTCTGAAAATACTGCAGGTCAATATTAGTTGAAACTGAAATATAGTGCAGACCTTCTTCAGGCTTTGATCTATTTGCTTTGACTGAATTGAACCTGATTAATGATTTATATGGTTTGTTCTGGATCATACTGTTATTTTTAGAGTCGTCTGACTGCAGGGTGATTAATGCAGTCTCATCCTGTTCTGCACCTAATTTTACTGTATCTGTGGGGACCGGGAGGATGATACTGTTTTTAGATAGATCAGTTACTGTTCCTATCGccataaaacagattttttgaaTCTGTTGTTGCTGAAGTACCCGCTGAATTTTATTGTTAAACGTgacttttaaatgataaaatgagaGTTTAAGACAGATAGAAGAGGAAACAAGGCAACAattctgtatatgtgtgtgtttgtgtgtgagagagagaaagatgtgaacaggaggaaggagtaagagagtgaaagttgattatgagatttaatccatattttagtatttgaatgctatatcaaaataaatgtattaataaaggATTCTGTATGAATTTAATGTATTAACAGGTTGGCTAGTACTAAGCTTATCATGTGGACGATATATCgccccagaaattattgcgataaatgatattattggCATTTGAAAACCATTAAATTACATTGACAAAGCAATATTAGGACAGAATAACAAAgctttatatcattttaaagaCAAGACAATTGTAAGttaatcatagtttgggaaatatatttttatttcttcatctACTGTAGTCtgttcacactgtgtgtgtgtatgtataataactgtatgaAGTATGGAGTATGGAGTCGCAGTTATTGAAGCTTTGGTCTGGTATTGCATGACTggataaaatactgttcactgttatatatgtgaacgaacataataatataataaagacgtaataaataaaaacaatagacaatataataatataatataatatttagttCTCAATACTTTATAATTCTCAATACTTTACACCCCTATATAGCCCACACCTAATATTACAGTGTGTTCTGCACActgcacatatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81659 lncRNA downstream 4155 51358476 ~ 51360167 (-) True G60570
TU81641 lncRNA downstream 16259 51347275 ~ 51348063 (-) True G60556
TU81632 lncRNA downstream 34597 51298513 ~ 51329725 (-) True G60552
XR_002650104.1 lncRNA downstream 45408 51309800 ~ 51318914 (-) True LOC111192703
TU81623 lncRNA downstream 112023 51213528 ~ 51252299 (-) True G60544
TU81707 lncRNA upstream 91626 51534478 ~ 51536312 (-) False G60594
TU81708 lncRNA upstream 91626 51534478 ~ 51536312 (-) True G60594
TU81703 lncRNA upstream 96646 51539498 ~ 51580634 (-) True LOC103045940
TU81735 lncRNA upstream 202369 51645221 ~ 51647695 (-) True G60619
TU81738 lncRNA upstream 203996 51646848 ~ 51647695 (-) False G60619
XM_007245836.3 mRNA downstream 78153 51276303 ~ 51286169 (-) True LOC103030869
XM_022670859.1 mRNA downstream 91591 51216841 ~ 51272731 (-) True fgd1
XM_022670860.1 mRNA downstream 120610 51216841 ~ 51243712 (-) False fgd1
XM_007236937.3 mRNA downstream 627070 50657611 ~ 50737252 (-) True LOC103044996
XM_022670942.1 mRNA upstream 3347 51446199 ~ 51460739 (-) True LOC111192719
XM_007245843.3 mRNA upstream 16584 51459436 ~ 51475848 (-) True LOC103032967
XM_022670869.1 mRNA upstream 18241 51461093 ~ 51471858 (-) False LOC103032967
XM_022670872.1 mRNA upstream 100254 51543106 ~ 51577160 (-) False LOC103045940
XM_022670871.1 mRNA upstream 100254 51543106 ~ 51577160 (-) False LOC103045940
TU81451 other downstream 532122 50827695 ~ 50832200 (-) True G60441
TU80777 other downstream 2059070 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 2280389 49062621 ~ 49083933 (-) False LOC103030200
TU80460 other downstream 3444941 47816355 ~ 47919381 (-) False selenok
TU81746 other upstream 263486 51706338 ~ 51708112 (-) True G60627

Expression Profile