RNA id: TU81738



Basic Information


Item Value
RNA id TU81738
length 710
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G60619
representative False

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51645221 ~ 51647695 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


aagagtgttCCCTCCGTCTGCCATCCCTCGCTCCGTGGTGCCATTGGAATTCACGGCTTGAATAATGAAAAGCGGCTTCTGCTTCTTCTCTGCACAGCGCCGCCTGTTCACAGCCTTCTTATTCACCTGAGCAATGGGCTCAGCATCATCTttctcttcctcatcctcctcttcctctttcccAGAAGCCTCTGCTGCACCTTGCTCCCCGTCTGCAGCATCCTGGGAGTTTGTGTCCGTGCTGCCGCCGGCCGACTGGCCCTCCTCTGTGCTGCTGCCCCGGTCCTGTTCACTACTCGACTCTTCCTCCTCTGTCTTCTCCTCTTCTGCACCGTTCGAGCCAGGTTCTGATTGGGCGTTGTTCTGTTCATCACCGTGAGTGTTCTCCTGAGACTGCTCTACTGTATTGGAGGTTCCAGCTTCCTCTGAGTCTTCTGTAACATCATGAGTGTTCTCCTGAGGCTGCTCTACTCTATTGGAGGGTCCTGCTGTCTCGGAATCTTCCTCAATATCATCTGTGTGTGAAGATTAAAGACAAATGATTATGGATGAGATCAGAACCGAGACTTAACTGCTAATATGAATGTGGACATGGATGTTACTGTTGATATATTTTAACACTATacgtccaaatatttgtgggcaccctttttaatgaatgcattcagctactttacgttgtacccattgctgacacagatgtgccagTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81703 lncRNA downstream 66214 51539498 ~ 51580634 (-) True LOC103045940
TU81707 lncRNA downstream 110536 51534478 ~ 51536312 (-) False G60594
TU81708 lncRNA downstream 110536 51534478 ~ 51536312 (-) True G60594
TU81681 lncRNA downstream 138268 51421171 ~ 51508580 (-) True LOC103032656
TU81675 lncRNA downstream 233701 51410604 ~ 51413147 (-) True G60584
TU81747 lncRNA upstream 64922 51712617 ~ 51713092 (-) True G60628
TU81748 lncRNA upstream 65492 51713187 ~ 51714166 (-) True G60629
TU81917 lncRNA upstream 117421 51765116 ~ 51765779 (-) True G60736
TU81920 lncRNA upstream 199090 51846785 ~ 51848839 (-) True G60739
TU81938 lncRNA upstream 201932 51849627 ~ 51850048 (-) True G60752
XM_022670873.1 mRNA downstream 30474 51602312 ~ 51616374 (-) True abtb1
XM_022670872.1 mRNA downstream 69688 51543106 ~ 51577160 (-) False LOC103045940
XM_022670871.1 mRNA downstream 69688 51543106 ~ 51577160 (-) False LOC103045940
XM_007245843.3 mRNA downstream 171000 51459436 ~ 51475848 (-) True LOC103032967
XM_007245847.3 mRNA upstream 9706 51657401 ~ 51662840 (-) True LOC103034245
XM_007245855.3 mRNA upstream 255529 51903224 ~ 51973896 (-) True slc6a8
XM_022670882.1 mRNA upstream 401931 52049626 ~ 52063200 (-) True LOC103025058
XM_022670883.1 mRNA upstream 401931 52049626 ~ 52056448 (-) False LOC103025058
XM_022670881.1 mRNA upstream 401931 52049626 ~ 52056446 (-) False LOC103025058
TU81451 other downstream 814648 50827695 ~ 50832200 (-) True G60441
TU80777 other downstream 2341596 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 2562915 49062621 ~ 49083933 (-) False LOC103030200
TU80460 other downstream 3727467 47816355 ~ 47919381 (-) False selenok
TU81746 other upstream 58643 51706338 ~ 51708112 (-) True G60627

Expression Profile