LOC103034245 (LOC103034245,LOC105899047,LOC108441101,LOC101487991,LOC107653429)


Basic Information

Item Value
gene id LOC103034245
gene name LOC103034245,LOC105899047,LOC108441101,LOC101487991,LOC107653429
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51657401 ~ 51662840 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245847.3
CGTCTCCTGCAGAGTACAGAGTTAGCTTAGCACTGTAGCCTAGCTAAGGTAGCGAAGTCGTGTCCTAGACcataattaacattagctaagtATCTCAATAGCTCAACAATGAGGCTCACGCGGCTTCTTTAGTTTTCAAGTTGTATTTATAAGGCATAGTCactatttatattattagtaCTGTACAGTAATTTAAATTAGAGGTAGAATAAATGCTATATGCTAACTTGACCCGAGTTTAAAAGTTTAGGTTGGTTAGCTTagatagctaatattaactttTCTCCAAACATGGCTGGACCCGAGCTGCTGCTGGACTCCAGTATTCGTCTGTGGGTAGTTCTGCCCATTGTCTTTATCACGTTTTTTGTTGGAGTTCTGCGTCATTATGTCACTCAGCTTTTACAGAGTGATAAGAAAGTGGACCTGGAGCAAGTCTCTGACAGccAGGTGTTAATACGCAGCCGCGTTCTCAGAGAGAATGGAAAGTACATCCCTAAACAGTCATTTGCCATGAGGAAACATTACTTTAACGATGCTGAAACGGGTTTCTTCAAGAAGGTCAAGAGGAAAGTGGTGCCCAAAAATCCCATGACTGATACCAGCATGTTGACTGACATGATGAAAGGAAATCTCACCAACGTGCTGCCAATGATTGTAATCGGTGGCTGGATCAACTGGGCTTTCTCTGGGTTTGTCACTACTAAGGTTCCCTTTCCACTGACTCTGAGGTTTAAACCGATGCTGCAGAGAGGGATTGAACTGCTGTCGCTGGATGCGTCCTGggTGAGTTCAGCCTCTTGGTATTTCCTTAATGTGTTTGGGCTGCGGAGCATGTACTCTCTCATACTCGGGCAGGACAACGCTGCGGACCAGTCAAGAATTATGCAAGATCAAATGACCGGAGCAGCCATGGCTATGCCACCTGACCCCAACAAGGCCTTCAAGAGTGAATGGGAAGCTCTGGAGATCGTTGAGCACAAGTGGGCTCTGGAGAACGTGGAGGACGAACTGATGTCTCAAGACCTGAACTTTAGAGGACTCTTCAGTCAGGATCCCAAAAAGATGTTTTGATgggagcaaaaaaacaaaaaacagtaaactAAAATAGAATATGATGGTAGTTGATGCACTGTTATGAACAAAACCCTCAAAATCAATTATGATTATAATCATTATTCATTCCCCTAAAATTTCTGTTGATTAATTATCTTTTGTcccattgtttttctttcttttttttggctgAAATGTCTTACAGGCTGAAAGATGATTAAGATGTCAGTGCATCATCACTTAATTTTTGTCATcgtttattttgaaatatttgttctttataaTGTGCCCAAATTTCAATGAATAGAGCAAGATGCTCTTTTATACattggttttcttttttgtctgtaaaattgatgtttttggagtttttttttgcataacagtgatgatgatgatgaagataatgGCCCTGTAAATTATGCAATAACTGCTGGTATAAATGGTTAAGAGAAAAACAAGCTGAATTCAGGAGATACTGGACTGTAGTGGTTGcgctgtattgttttttttttctttttaccaaaaatcttgacttatactttttttgttgtttgtgaggagaataatttttttgttagtttgttctTGTGTGTTATAAGTATTACCTCATCTTCTTCAGTATTGCCTTAATTACATGTTGAAGACAGCCTTTaaatcaggtgtgtgtgtgtgtgtctctctctctctctcgtataGTGTTATCTATACCACCCATGCCTTCCTCTCTAAAAGTCTTCCTGTCTCTGCCTTCTGCTTATATAATGAGACCCTGAATGTGGATCGATTCTTATTGCTGCCTGTGAGTCAGAACTTTCACTGATGACGAAATAAAGTGATTTCTTGAAGAAATAATGGCA

Function

NR:

description
ER membrane protein complex subunit 3-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K23564 EMC3, TMEM111; ER membrane protein complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245847.3 True 1916 mRNA 0.39 8 51657401 51662840

Neighbor

gene id symbol gene type direction distance location
abtb1 abtb1,LOC107674366,LOC107696919 coding downstream 41027 51602312 ~ 51616374 (-)
LOC103032967 LOC108441106 coding downstream 181553 51459436 ~ 51475848 (-)
LOC111192719 NA coding downstream 196662 51446199 ~ 51460739 (-)
LOC103030869 LOC108440552,LOC108265824 coding downstream 371232 51276303 ~ 51286169 (-)
fgd1 fgd1,LOC107552218,LOC108266043 coding downstream 384670 51216841 ~ 51272731 (-)
slc6a8 slc6a8,LOC103036862,LOC108441094,LOC107734513,LOC105006658 coding upstream 240384 51903224 ~ 51973896 (-)
LOC103025058 LOC108440549 coding upstream 386786 52049626 ~ 52063200 (-)
LOC103025375 srpk3,LOC107743111,LOC107601770,LOC107727421 coding upstream 469091 52131931 ~ 52153152 (-)
plxnb3 plxnb3,LOC108265307,LOC107727420,LOC107674349,LOC107701812,LOC107584917 coding upstream 495722 52158562 ~ 52307803 (-)
LOC103026406 abcd1,LOC108265308,LOC108440542,LOC107674359,LOC107701814,LOC107727428,LOC107552221,LOC107743108 coding upstream 647489 52310329 ~ 52333085 (-)
G60619 NA non-coding downstream 9706 51645221 ~ 51647695 (-)
G60594 NA non-coding downstream 121089 51534478 ~ 51536312 (-)
G60571 NA non-coding downstream 214549 51364322 ~ 51442852 (-)
G60584 lhfpl4b,LOC103032126,LOC108440531,LOC107584928,LOC107727430,LOC107674308,LOC105898894 non-coding downstream 244254 51410604 ~ 51413147 (-)
G60570 NA non-coding downstream 297234 51358476 ~ 51360167 (-)
G60628 NA non-coding upstream 49777 51712617 ~ 51713092 (-)
G60629 NA non-coding upstream 50347 51713187 ~ 51714166 (-)
G60736 NA non-coding upstream 102276 51765116 ~ 51765779 (-)
G60739 NA non-coding upstream 183945 51846785 ~ 51848839 (-)
G60752 NA non-coding upstream 186787 51849627 ~ 51850048 (-)
LOC103045940 slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205 other downstream 76767 51539498 ~ 51580634 (-)
LOC103032656 LOC108413501 other downstream 148821 51416220 ~ 51508580 (-)
G60441 NA other downstream 825201 50827695 ~ 50832200 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other downstream 1027237 50565289 ~ 50630164 (-)
G59951 NA other downstream 2352149 49304608 ~ 49305252 (-)
G60627 NA other upstream 43498 51706338 ~ 51708112 (-)
LOC103028851 LOC108440537,LOC107674333,LOC108265526,LOC107584878,LOC107727418,LOC107743115 other upstream 821589 52484429 ~ 52524184 (-)

Expression


Co-expression Network