RNA id: TU81746


Basic Information

Item Value
RNA id TU81746
length 1775
RNA type TUCP
GC content 0.38
exon number 1
gene id G60627
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51706338 ~ 51708112 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTCTTGTCCCAATATATTTTATGgctccaaaatatatatttttatatgttttttgtgaTCTGAAAAAAGAtcctatatattttacattatcagCACAATACATAGGTCTTGTTGatccaatatatttttattttcatatgttttatatatttatatatttctggcttaaaaatatatatattttaaatgtgtttttgtgatctcaaaaaagagaaaatgctgTGTCCTCAATATATTCATACTCAGTGTTTTGTCTTATGTCCTCAATATATTCCATAGTATGTCAACAGTATATGATCTTGTAGTCtcaataaaacatctatatattatCACCACTTCGccctttaaatttttattttgtatttacactatattttcTTGTGGCCACGCCTCATTAAAAACAGCTGCCTTGTCACTTTAAGGATTTTAAAAGGATctgtaagagagaaaaagacaaaacgacagataaaaaaacaaaaacaagagaaatagagagatattTAAGGACAATGAAAGACAAATGCTGCAGCACATACACAGATACTCAACTGGATTCTATACAAATCGCTGGTCTTTGGTCTCCTCTGGCGTTTTCTTGAAAAACAAGCAACAGAAAAACTACAGAACATAAAACTACAAAAGTTTCCTCGCGGCGCTGACGAGGCGTCTTTTCTTTCAGGAGATCTCTGTCAGAgcagacaaagaaaaagaacaaaaaaaaaaaagaacttaaaaCTGGAATGGGAGCATATTAATCTGTACAAGGAGAGAGTTCATAGAGAAAGGAATGAAGTCAAAGCCTAAACGGTAACGTGGATACATTCTGCGTCTTGACAAGGAGTTGATCATCAATGATGGTGCTTCTTTTTCCTCCGCTTCCTGTTTCCTCTTCCACGTGTCAATGGATGGCCATGTCATTCCACTGTTAATAAATGTCTTTAGCAAAATAGATTCCATGTAGTTATCCTTGGTCAGAATCCAgaattgttaaaatagcaattccttttttttaagtccTTTAAAAAACATAGTAGGTTCATCATGATGGTTGCTCTGAGAGTTTATACAAACAAGTTCCGTACAAATAAGTGAGCTTTCACTGCCCTCTGTCTGTCCTCCGCCATATTTCAGTACTTCAACGTCTctcataaagaaataaaggaacaACATCCAAAAAACCATACCGTCAGAGCGACATCTGCTTCTTCATGATATACACAATAAAACACTGCCACTCATTAGCAGGTGATGAAAGATTTAGAGCAGAAAGAGCTCAAAGTTCAATACCCATATGCATCTGCTGCTAAGAGTAGTCCTTAAAAACGGAAAAGCTGATGCACCAAAACGTCCgacaaaaataaataacgtacaagaagaacaaaaaattttttttacaaacgaacaaacaaaaaacagaacctGAAAGAAACCGTTGAGAGTATTTAGTCTGTAAAAATGCCACCTTTCCGTCCTGAAGCAGGGGCTGCTCTGGCCGGGCTGAGCGTGCACGCCTCCTGCTGCTCAACCCTCACTGGACCGGAAGCTCTTCTGAACACCAATCAGGGCCTGTTATGGAGTGTGCGGTCTGTTCATTACCTGTCGTCAGCTTCTCACCGGCTGGGCTGGAAGTCAATCACCACAAAGGCAAGTAAAGGAGCCAATCACAGGCCGGCTATGGTTTCTGCAGCCCCGGGGACAGCACGACAGGAGTGGACAGGCCGTCCACACTCAAGGCTGGGATGTGGATCTGATTGCTTCCGTTGGAGGGGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81735 lncRNA downstream 58643 51645221 ~ 51647695 (-) True G60619
TU81738 lncRNA downstream 58643 51646848 ~ 51647695 (-) False G60619
TU81703 lncRNA downstream 125704 51539498 ~ 51580634 (-) True LOC103045940
TU81707 lncRNA downstream 170026 51534478 ~ 51536312 (-) False G60594
TU81708 lncRNA downstream 170026 51534478 ~ 51536312 (-) True G60594
TU81747 lncRNA upstream 4505 51712617 ~ 51713092 (-) True G60628
TU81748 lncRNA upstream 5075 51713187 ~ 51714166 (-) True G60629
TU81917 lncRNA upstream 57004 51765116 ~ 51765779 (-) True G60736
TU81920 lncRNA upstream 138673 51846785 ~ 51848839 (-) True G60739
TU81938 lncRNA upstream 141515 51849627 ~ 51850048 (-) True G60752
XM_007245847.3 mRNA downstream 43498 51657401 ~ 51662840 (-) True LOC103034245
XM_022670873.1 mRNA downstream 89964 51602312 ~ 51616374 (-) True abtb1
XM_022670872.1 mRNA downstream 129178 51543106 ~ 51577160 (-) False LOC103045940
XM_022670871.1 mRNA downstream 129178 51543106 ~ 51577160 (-) False LOC103045940
XM_007245843.3 mRNA downstream 230490 51459436 ~ 51475848 (-) True LOC103032967
XM_007245855.3 mRNA upstream 195112 51903224 ~ 51973896 (-) True slc6a8
XM_022670882.1 mRNA upstream 341514 52049626 ~ 52063200 (-) True LOC103025058
XM_022670883.1 mRNA upstream 341514 52049626 ~ 52056448 (-) False LOC103025058
XM_022670881.1 mRNA upstream 341514 52049626 ~ 52056446 (-) False LOC103025058
XM_007245817.3 mRNA upstream 423819 52131931 ~ 52153152 (-) False LOC103025375
TU81451 other downstream 874138 50827695 ~ 50832200 (-) True G60441
TU80777 other downstream 2401086 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 2622405 49062621 ~ 49083933 (-) False LOC103030200
TU80460 other downstream 3786957 47816355 ~ 47919381 (-) False selenok
TU80461 other downstream 3786957 47843007 ~ 47919381 (-) False selenok

Expression Profile