RNA id: TU81451


Basic Information

Item Value
RNA id TU81451
length 4486
RNA type TUCP
GC content 0.36
exon number 2
gene id G60441
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 50827695 ~ 50832200 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttcaCATTTGCTGTTTTGAAAATGCAAGTTATACTGAGtgcaatactgtaaaataatttaagaatgTAAGAATGAACAGGATAAATAAACACTACAGCAGattaaatcatttatatcaCTCGGTTTTattcaaagagaaaaaaatcaacCTTTTAACTGATCTAATTTTTACAAAACATCCCCCTTTtataaaaaagacatgaaattcCCCCATAACAGCACAGAGGGGTGCGGGCACAGCTCCAGCGTCTGCTCCACACACTGTACAAAATTACCAAAAATGGCTTTTACATCCTTTTATAAACGTTACTTCAAAATAGAAGTGTAAAACCATAAACGAGAAGCACTTCCCCCATTTCAAATGAGGCACAAATTACTACACGCTCCGTACAGCTCATAATCATCTGTACAGCTCAGAAAACATTCACACAGTTCATAAACATGCTGACCAAAGAGAGATTACTGCATCCATTTAGACTTCTTTAGGCCAGAAACATACAATGCAAggacgctaatgctaatgctaatgcctaGCCAATGCTCTTTATACGCACGGTCCTACTGTACACATTACATTActgtttcagtttaaaaactcAGGGGGCGCTAGAGGACACATCATATGCTGCGTTCCAGTTAACTAGGATGAGTTGACGGTATGCCAGTTAAACATTCAGATATCAGCTGTGATTATTAGCATTGTACCAAGTTAGCATTGCTAACAATGCATTATACAGTATTCTGAGCATCCAAACACCTCAGAAACATTGTCCACAGGTAGACTTTAGACATTAGTGAGTGTTGGAAGACACTAATACACAGTAGTGAtgataaaactatataatactactgcttttactgcTGTTGATGTGCagggcagccatcttggattttgaACTCAGGGTTATGAAGGTTCTCCTTACCTTTTATAGTACGAAATCCAACCTGTAGAAACGTTCCAATTTAAATCTCCTACTTTGAATTAGGAAATACTGACATCCAAGTTTAAATGAAACGCAGCATTAGTATTTTGATagctgattgtaaaaaaaaataataaaaaaaagcttctgtAGCACCCCCTTGTGGAAATGCTCAGAATGCAGCttgcacttttaaaaaaaaaaatagaatatcattgaaaagttactttatttcagtaataaaatagtttaaaatgtgaaactcatacattatatagatgtattgcacccagagtgatctattttaagcatttatttattttattggtgatgattatggcttacagatgATGAAAAACCCAACAAAAATGAGTGTTTTAGAACATTAGAATAGTATATAAGTCCAAATGGTATTTttcggcagtgtgggcagtgtgccaagtcctgctggaaaatgaaatctgcatatcTATAatagttgtcagcagagagaaagttctctgacaacttttatgatgatgtggatttcattttccagcaggacttggcacactgcccacacttctaaaagtacaaattggtcagatttttggatttttcatTGGATGTAagtcataataatcaacaataaaagaaatatactcTTAAAATATatcgctctgtgtgtgtaatccttataatatatgagtttcatattttgaactgaattactgaaataaactgaaataaatacttttcaataagatgcactagtatcaTTTGTCATCCCTATATTTTAATGCATCTGTGAAAATTCAGTCTGCACAGCTCAAAGCATCTTTCTTTGCATCCTTGCATGAAGTATATTTCTggtcttaaacacacacagttgtCAACAGTCAAGCTTTACCTGttgttatattataaaaaatgcaCTCACTGCCCAATATATCATAAACACCCACCATGTATTTCCACTCTCTGTAGACTGTTACTGTATTTTCCCATCTCCCACACAGGCTATATTTACCCTGTTTATCACTGCAacttaaaatatgtttgtaataaagttacCAAGGAGAGTAAACTCACATATCAGTGttagtttttaatatatttgtgatAGTGTTGAAGATTTGCCGTACTAAGTACTAAGCTGAACTGACCCTGAAGGAATCGTTAAATCAGTGACCACAAGCCTCCTCACCTGCAGATCAGCCTGcatatatgtgtaaaaaaatcccattcaaaaaatatgtttaaaatatgtttagagATAAATAAGTGAATATATCACTAATTATATTAATCTCAAATGTTCGTTATTTTTTTGCCGTACAAATATGTTACacctttttaatatatactgCCATATACTGTGAATATATATCGTTACATATTTTCAACATACACTGCCACACTGTCACAGTATTAACTCTCATATAGAGCCTTGAACAGTCAATACAATTTCCCAAATAGTGTTGATATACACAGTCATATATAGGAGTATATGTTCATAATATATCATCAATATATGTTGCTATatacaattaataataacaataacaatttcCCAAATGCTGTTAATATATACTGCATTATACTGCCAATGTATACAGCAATATGCTTTTAATACACACTGCCATACATTATGTACTGCCTTATACTGCCATTTGCTGCCAATAtacaatttatattatatactctATATTTGTTCAATATGTACAGCCATATACTGCCATACATAGTCAATACAAATTCCCAAATACATTCAATATACAGTCATATCAGTAAGAGCCTTGACAAGAATCTTCTCAATATACTCTAAATATATACCATCACAAACTTTTTATACATACTACAATATACTTTCAATATATGCTGCTATGTAGTGTCAATATAAATAGTGCCATATATAGTCAATGTATACACTGTCATTTACTTCCATATATCCTATCATATATAGTGTCATATACAATCAGGACAAGTTCCCCAAACACCGctaacataataatatacagctttTTACTGCCAATGTATACAGCAATATGCTTTTTGCTTTCAATACTCGCTGCCATATACCATCAATATACTCTACCTTATATGGTCATACCTGTTCAAtatatactgccctatactgaaaatatatttatatatatatttatagtcatAAACTGCCAATTTGCACTAGAATATGCTGCCACATCAACATATTACTGCCATAATACACACTCATATACTGtcatatatatcatatactgtcaatataaactgaaaaaaagggttgaGTGGGATTGAATGGGATTCCTCACAGCAGTAGCTCAGACAGTAAAATCGTGCAGGGAGGAGGCTTTGAGGTCGCTATCCTGAAGAAGTTTATTCTGGATGAAGATTGTTTTTGTGAGGAGAAATAATTATGTTTGCATAAATCTATCTGGTGGTGATGAACAGAAATATGTATGTAGAGTATGTAGTCTACCTAATACACAAGACCACTCACTCCACCTGGCCCTGCTTATGGAGTCCATGCTCATTTTAGTGAGTTACCTTCATTACCACACCTGATTTCACTCATCAGCTCGTTAATAAGCCCTTCAAAGAGGAACCAGACTGGGAAACACCTGACCAGCTGATCTTCACTCTATAGTTACAGTATATTGGCTAACTGAGAGGATGCTGAAGGTAAGGCCATGAAGAAAAGAAGGCcagcacagagagaaagaaagagagagagagagagagagagagagagatacaaaatcCAGAAGTATAACTGCAAAAAGGCAGACGAATAACCAGAGTTAGCAGAATCAGAATTAAACGGCTAATAAAGGAATACTCCACCATAATTCAGCCCGATCTCAATTTGCAAATACAAATAAGTGGGTCTCAGAGAACTAAGTGGTCCAGCGAACTAAgctgctgccactatgatcgggagattgctggttcgaatcccggtcatgctgcttgcaaacatcagctgccggagccccgagagagcacaattggccttgctctctctctgggtgggtagatggcgttctttccccacatcactacaaagggtgatgtcgatcagcacaagactgcgtctgtgagctgatgtatcagaaccgagtcacagCGCTTTCCTCCAATGCTGAAATTATCTGTGTCAATAAAGGCCAACATCAGACTTAAAAACAGTGGAGTATTCCTTTACTCGCTATTGTCTCTGTCCTGAGCACGTATCCCAGCATGCTTTGCTCTACGCCAGAGAggacagtcagtcagtgagaCCAAAGACATCCAGTCATCCAGTCAgaaagaaagaaagaaagaaagaaagaaagaaagagagagagagagagatagtgggCGTGTCTCAGGATGGGGAGTACTGTTTGGCACGGTGATCAGATCTCTTAAGGATTTTATGAAGGCCTGTAGGCATGTAGTACGGTTTAGACGGAGATCCATCGTTTCTCTCCAGATCTTCACCTGAAACACGTTCCGTCACCGGAGAACAGCAGCAAGGAACAGCAGAGGAACAGCAGGGAGCAGGAGGAAAACAGCCAAGTAGAGCAATGGAGAACAgcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81449 lncRNA downstream 26188 50800993 ~ 50801507 (-) True G60440
TU81444 lncRNA downstream 29301 50789307 ~ 50798394 (-) False G60439
TU81445 lncRNA downstream 29301 50789492 ~ 50798394 (-) True G60439
TU81446 lncRNA downstream 29301 50789492 ~ 50798394 (-) False G60439
TU81442 lncRNA downstream 29968 50789492 ~ 50797727 (-) False G60439
TU81452 lncRNA upstream 2880 50835080 ~ 50837319 (-) False G60442
TU81453 lncRNA upstream 2880 50835080 ~ 50837319 (-) True G60442
TU81454 lncRNA upstream 2880 50835080 ~ 50837319 (-) False G60442
TU81476 lncRNA upstream 33955 50866155 ~ 50872466 (-) False G60457
TU81474 lncRNA upstream 37539 50869739 ~ 50872466 (-) True G60457
XM_007236938.3 mRNA downstream 90443 50657611 ~ 50737252 (-) False LOC103044996
XM_007236937.3 mRNA downstream 90443 50657611 ~ 50737252 (-) True LOC103044996
XM_007236939.3 mRNA downstream 118964 50657611 ~ 50708731 (-) False LOC103044996
XM_007236943.3 mRNA downstream 197531 50565289 ~ 50630164 (-) False LOC103046211
XM_007236942.3 mRNA downstream 197531 50565289 ~ 50630164 (-) True LOC103046211
XM_022670859.1 mRNA upstream 384641 51216841 ~ 51272731 (-) True fgd1
XM_022670860.1 mRNA upstream 384641 51216841 ~ 51243712 (-) False fgd1
XM_007245836.3 mRNA upstream 444103 51276303 ~ 51286169 (-) True LOC103030869
XM_022670868.1 mRNA upstream 584020 51416220 ~ 51444657 (-) False LOC103032656
XM_022670867.1 mRNA upstream 584031 51416231 ~ 51444657 (-) False LOC103032656
TU80777 other downstream 1522443 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 1743762 49062621 ~ 49083933 (-) False LOC103030200
TU80460 other downstream 2908314 47816355 ~ 47919381 (-) False selenok
TU80461 other downstream 2908314 47843007 ~ 47919381 (-) False selenok
XR_002650096.1 other downstream 3827031 46999584 ~ 47000664 (-) True LOC111192695
TU81746 other upstream 874138 51706338 ~ 51708112 (-) True G60627

Expression Profile