RNA id: TU80461


Basic Information

Item Value
RNA id TU80461
length 742
RNA type TUCP
GC content 0.49
exon number 6
gene id selenok
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 47816355 ~ 47919414 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCCCACTGTGTCGCAGCCGCTGTACGCGCAGGTCCGCGCTGCGTCATCACCGCAGCAAAACAGTAGAGAAGGAAGCGAGATGGTGTACGTGTCTAATGgTCAAGTCCTGGACAGCAGGACCCAATCGCCATGGAGGTTATCCTTCATTAGCGACCTCTTTTGGGGCGTAGTGGAGTTTATCGGCCTGTTCTTCCAGTCCCTCGTCCAGCCAGATTTGTCCAAAGATGGTAACTCTGGTGCATCTTCACGCTTCAGCGATGGCAGAGGGCCTCCTGGATTCCCCGGGCGAAGACGCATGGGCAGAATAAATCATGGTGGAGGCCCCAGTCCTCCTCCAATGGGAGGTGGAGGATGAGGAaggTAAACGCCTGCACGGTGATGCAGGCGTAGAAGAGTGTGATGTGTTCCTCAGTGGCTGCACACTGAATGTATAAGCTCTCCAAGGCTGGAAGGCTAAGCAGTGATGATCTCTTATGTGAACACGCCCAAGGTCGTCGCACTCTTCACCCTCAGGCTGCTTCTGCATTGCAGATTTTTGATGCTACTCTGGGAATTCCTGTCATTAGGGGCCGGAGTGGTTGAACTCAGCAGTCGTactcctcttttttctttgtgtcatgttttgtctctctgttaaATAAAGTTAAGAATTGCACAATAGGTTGGATTATATATGAGTTTTAAGAACGATGTGTTACGGTTAAATAATAAAGATGAAGTATGCAATAtaaaaaaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80441 lncRNA downstream 181650 47660194 ~ 47661357 (-) True G59655
TU80440 lncRNA downstream 182912 47654563 ~ 47660095 (-) True G59654
TU80443 lncRNA downstream 194709 47644995 ~ 47648298 (-) True G59656
TU80424 lncRNA downstream 215307 47575286 ~ 47627700 (-) True G59643
TU80415 lncRNA downstream 359262 47474334 ~ 47483745 (-) True G59634
TU80482 lncRNA upstream 8411 47927792 ~ 47928375 (-) True G59687
TU80504 lncRNA upstream 39790 47959171 ~ 47959400 (-) True G59702
TU80506 lncRNA upstream 57817 47977198 ~ 47977584 (-) True G59704
TU80507 lncRNA upstream 59106 47978487 ~ 47978970 (-) True G59705
TU80550 lncRNA upstream 85061 48004442 ~ 48005172 (-) True G59744
XM_007237028.3 mRNA downstream 125457 47701250 ~ 47717550 (-) False dcp1a
XM_007237027.3 mRNA downstream 125458 47701250 ~ 47717549 (-) True dcp1a
XM_015602380.2 mRNA downstream 125459 47701250 ~ 47717548 (-) False dcp1a
XM_022670804.1 mRNA downstream 144537 47676442 ~ 47698470 (-) True tkt
XM_007237020.3 mRNA downstream 352232 47458020 ~ 47490775 (-) False gabrd
XM_007237073.3 mRNA upstream 17125 47936506 ~ 47943996 (-) True LOC103032709
XM_007237000.2 mRNA upstream 410372 48329753 ~ 48349369 (-) True lrtm1
XM_007236999.3 mRNA upstream 570548 48489929 ~ 48508192 (-) True wnt5a
XM_022670821.1 mRNA upstream 602868 48522249 ~ 48902841 (-) False erc2
XM_022670818.1 mRNA upstream 602868 48522249 ~ 48902841 (-) False erc2
XR_002650096.1 other downstream 842343 46999584 ~ 47000664 (-) True LOC111192695
TU80091 other downstream 1161096 46623612 ~ 46681911 (-) False LOC103023429
TU79995 other downstream 1656113 46182741 ~ 46186894 (-) True G59341
TU79950 other downstream 1793434 46042791 ~ 46049573 (-) False nr2c2
TU79350 other downstream 2781333 45061109 ~ 45061674 (-) True G58868
TU80719 other upstream 1143240 49062621 ~ 49083933 (-) False LOC103030200
TU80777 other upstream 1385227 49304608 ~ 49305252 (-) True G59951
TU81451 other upstream 2908314 50827695 ~ 50832200 (-) True G60441
TU81746 other upstream 3786957 51706338 ~ 51708112 (-) True G60627

Expression Profile