wnt5a (wnt5a,LOC108411772,LOC107693599,LOC107553896,LOC107750813)


Basic Information

Item Value
gene id wnt5a
gene name wnt5a,LOC108411772,LOC107693599,LOC107553896,LOC107750813
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 48489929 ~ 48508192 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236999.3
TTCAAACCTGGAGACGCTCTCCTTCAGCACATGGTTTCTGGAAACACTCACCTCTTCCAGCCCGTTCAGCCGCACCGCCGGCTCTGTTGGAAACCTAAGCTGCTCTACATCAGCCACCCAGAAACGGACAAGCACGGAAGGCGTGGTGTGCGGCACAGAATGGAGGTCCACACAGTGACGGAGATACCTCCACGGATGTTCTAGCAGGTAGAGAGAAGCTAAACCCCGGGGGTAAACAGCGCCTCATCACTCTCTGCAGGATTTTACTCCTTCACTTCACCTTTTCATTTAGAGTACCCTAAACATCTCCACTCCAGTACGGATCTCTCCGGAGGAGCTTCTGAGAAGAAGTCGAAACTTAGAAGCAGAAGTAGATACTAGTGCTGTTTGTGAATGTCTTTTCTGAGTAAGCGTTTCCTCGGATTGCTCTGGGACTCTGTGCACAGCCTGACTGCAAACTTCACGCAACTTTTTACTGTGGATTGCAACTCTCGTGGGGTGTAGGAAGCTCGAGAAGCTCGTGGGATACACACTGGGAACTCTAGGACTGGCTTTGGAATTTAGCTTCAGGAGCCATAATATAGAAGAAACTCTCTGAATCCTCTGTTTAGCTACATTTTGAAAGTAGCTCCTGCAGAATGTTCTTCAGAAGACTGTTCTGGTCCGGCTGTGTCGGAGCGATGGACACACGGCACGGTGTGATGGCCATCACCTTCCTGGCCTTCTTCATGCAGGTGGTGGTGGAGGCTACGTCGTGGTGGTCTCTGGCTATGAATCCTCTGCTGATTCCTGAAGCTTACATCATAGGAGCTCAGCCTCTTTGCAGTCAGTTGGCAGGCTTGTCTAAAGGCCAGAAGAAGCTATGCCAGCTGTACCAGGACCACATGCAGTACATAGGCGAGGGAGCCAAAACGGGCATTCGTGAGTGTCAGTTCCAGTTCCGACACCGGCGCTGGAACTGCAGCACCGTGGACAACTCCTCTGTGTTCGGCCGTGTCATGCAGATTGgaAGTCGTGAGGCAGCATTCACATACGCTATTAGCGCGGCCGGTGTGGTGAATGCAGTGAGCCGAGCCTGCAGAGAGGGGGAGCTGTCGAGTTGTGGCTGCAGCAGGGCCGCCAGGCCTAAAGATCTGCCTCGGGATTGGCTCTGGGGAGGCTGCGGCGACAATCTCAACTACGGCTACCGCTTCAGCAAAGAGTTTGTGGACGCCCGGGAACGAGAAAAAAGCTACGACAAAGCCTCAATGGAGAACGCAAGACTGTTAATGAACCTCCACAACAACGAAGCAGGGCGGAGGatgGTGTCAGACTTGGCCCACGTCTCCTGTAAGTGCCACGGCGTCTCAGGCTCCTGCAGCCTCAAGACCTGCTGGCTGCAACTGGCCGACTTCCGCAAAGTAGGCGACGCACTGAAGGAGAAGTACGACAGCGCCGCTGCCATGAAGCTCAACGGCCGCGGTAAGCTGGTGCAGGTGCACTCCAAATTCAACCCGCCCTCCAGCCACGACCTGGTCTACATCGACCCCAGCCCGGACTACTGCATCTTCAACCGGACCACGGGCTCTCTGGGCACGCAGGGCCGCCTCTGCAACAAAACGTCAGAGGGCATGGACGGCTGCGCTCTCATGTGCTGCGGCCGCGGCTACGACCAGTTCACGGCCACGCTGACGGAGCGCTGCCACTGCAAGTTCCACTGGTGCTGCTACGTCAAGTGCAAGCGCTGCTCCCGGAAAGTCGACCAGTTTGTGTGCAAGTAGCCCCAGCTCCCTTTTACCCTTGAGTGCGAGTGAACCAGAGTGCGAGAGCGAAGACGGGAGAAACATTGGGGAGGACGTggaatggaaagaaaaaaaaagaaactatataaattatatttatagagTCAAACAATTATACTGTTGTGGAAAAGACTGACAGTTCtgcttttgtgcttttattttgtttgtgtttattttgtttgtttctttctcaAAACAATAGGTACAAGAAGTCTAAAGAAACTGAGAATATTTATTTTGAGattttctttcctctcttttaacttttaaaaagtggAACACTTTAATTGTATTGCAGTTAGTGCAAACTGATCAGACAAAACAAAGCCTTTCATTAATCCACAAAAGAGTAAATCAGTACATTTTGGCTTGGCAAAGTAAGTGCACTGATCTATTTTACTCAACCGCACTGAATGGGCTTGAGTAATTTGGTGCTTAAATGTTTAGTTTCAGTCTCAACCACTGCCTGCTGCTCAGAGCCTGGTTTCTGTTGATTATGAAGAGTGGATATAACATGCTTGTTTCGGGTTTTGTGGATAAGCTCATCACCGTGCCTTAAACTAAAGCACACTTACGGTTCACAAGCTACACAGTCTTAATCAGAAAGCAGTCTAGCGTGAACCTCACCTTCATCTACATTTTTCACATCTCTTACTATAAATGATGTcctgaacagttttttttagagaaTTCACAGAATTCTCCACTTGTCTCCACTTGCAAGTGTTCTAATAGTTTTGACTTTGTAGTCTTCTACAAATGTTCCTCTTGCTGTGTCACGTGTAGCAAGCTTGGTTAGCACAGGTGAAAAGATGGGACCAACTCTCTGTCCAATTGCATTAGAGTCTTCTAGGACCAAAGATTGGCAGTTTTGGGGTCACTGGTTGCCAAGTCTTTCACCAGCTAAATGTTCGTTCAGGTGATTGTGGGTATGGAAGGTTGCAATGGGGTTTTCACTGAAGCATGTGCACTGCAACAACCAAACTGGTGGTTAATATAGGGGATACACACTGGGAATAAGCACAAACACGAAACGTCAGCAAAACTTTTGCGAGGAAATGAAAGTTACATACACATGTATGTTCCCTGGTTCTTACACCTTTTTGTTTTCCTGAAGGGCACATTAATGTTTGTTTTCACCAGCAGTCACAAGCCCACTGGCttgtgaaatacattttaatcataACTTAAATACATCTCATTTTTGGGTTCACTGTCAAACGTACAAACTTTCATTTTAACTACTATACAGTTACCACTAGTTATCTATACAACGTccttttttcattatcattacTACTATTCATTATAAATTCATCCAGTATATTTATTAGCTGTCAAATTCGAGGCTTTCAGAAAGTATTTCTTATGACtgacttttttatatatgtatgttccTTTTAAATCAAACTGTTAATATGCCTTAATAAATTTTAAACTTTAGCAACGTCAAACTATGGAAACAAACCCTTGAATCATTGAATCAGCGATGTGCGTTTTCCACAACAGCCATCTATTCTTCTACTATACAATTACATGTGCTGCCCCAGTagcctaattttttttaaaagtgcgTGCgagtgtgcgtgcgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtatatgtactctgacataaactgacagtTGTTCTATGTTTTGTACAGAAATGATTAAGGTaaaattttgtctgtatttttatattcgCTCATCCTGAACTATTAAGCATCTGAGTACAACAGATTCTGAGAACTTGATTCTCCGACTTAAGAAACAAATCAAAACTTCtccaacaaataaataagtctGGAATCTTA

Function

symbol description
wnt5a Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within pronephros development. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in brain; neural crest cell; ovarian follicle; pronephros; and tooth placode. Human ortholog(s) of this gene implicated in autosomal dominant Robinow syndrome 1. Orthologous to human WNT5A (Wnt family member 5A).

NR:

description
protein Wnt-5a-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K00444 WNT5; wingless-type MMTV integration site family, member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236999.3 True 3599 mRNA 0.46 5 48489929 48508192

Neighbor

gene id symbol gene type direction distance location
lrtm1 lrtm1 coding downstream 140560 48329753 ~ 48349369 (-)
LOC103032709 LOC108411942 coding downstream 545933 47936506 ~ 47943996 (-)
actr8 actr8,LOC107594971 coding downstream 579117 47895626 ~ 47910812 (-)
chdh chdh coding downstream 610812 47861633 ~ 47879117 (-)
dcp1a dcp1a coding downstream 772379 47701250 ~ 47717550 (-)
erc2 NA coding upstream 14057 48522249 ~ 48902841 (-)
tlr9 NA coding upstream 403796 48911988 ~ 48917131 (-)
apeh apeh,LOC107730641,LOC105013991 coding upstream 409590 48917782 ~ 48937325 (-)
LOC103035796 bsn,LOC108265177,LOC107698426 coding upstream 431545 48939737 ~ 48971138 (-)
acbd6 acbd6,LOC107665066,LOC107603185,LOC107758008 coding upstream 847345 49355537 ~ 49420407 (-)
G59769 NA non-coding downstream 55640 48433944 ~ 48434289 (-)
G59752 NA non-coding downstream 162664 48322221 ~ 48327265 (-)
G59744 NA non-coding downstream 484757 48004442 ~ 48005172 (-)
G59705 NA non-coding downstream 510959 47978487 ~ 47978970 (-)
G59704 NA non-coding downstream 512345 47977198 ~ 47977584 (-)
G59773 NA non-coding upstream 10811 48519003 ~ 48520310 (-)
G59809 NA non-coding upstream 12291 48520483 ~ 48522209 (-)
G59815 NA non-coding upstream 253053 48761245 ~ 48822839 (-)
G59823 NA non-coding upstream 400088 48908280 ~ 48908811 (-)
G59827 NA non-coding upstream 472473 48980665 ~ 48981136 (-)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 570515 47816355 ~ 47919414 (-)
LOC111192697 NA other downstream 1038537 47448958 ~ 47451392 (-)
LOC103040795 LOC108412055,LOC108265574,LOC105899021,LOC108412246 other downstream 1075495 47196651 ~ 47414434 (-)
LOC103023429 LOC103023429,LOC108442352,LOC108265644,LOC107594970,LOC107549568,LOC107684464 other downstream 1808004 46603244 ~ 46681925 (-)
G59341 NA other downstream 2303035 46182741 ~ 46186894 (-)
LOC103030200 cacna1e,LOC108265205,LOC108265123,LOC108265206 other upstream 554327 49062519 ~ 49192025 (-)
G59951 NA other upstream 796416 49304608 ~ 49305252 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other upstream 2057097 50565289 ~ 50630164 (-)
G60441 NA other upstream 2319503 50827695 ~ 50832200 (-)
LOC103032656 LOC108413501 other upstream 2908028 51416220 ~ 51508580 (-)

Expression


Co-expression Network