dcp1a (dcp1a)


Basic Information

Item Value
gene id dcp1a
gene name dcp1a
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 47701250 ~ 47717550 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237027.3
GTTCCCCTCAATTAGTTCCGTGCAGCCGCGGGCCAGTGTGCAAGATGGAGTCAGTGAATAAAGCGGGGCATCTGATGAGCCTGGCGGCTCTGCAGCACTACGACCCGTATATCAACAAGCTGCTCGACGTTACCGGACAGGTCGCGCTCTACAAGTTTAACTCTAAAGCCAGCGAGTGGGAAAAAACTGACATTGAAGgcactttatttgtttatgccAGGACAGCATCACCCCATCATGGGTTCACTATCATGAATCGTCTGAGCACAGAGAACTTGGTGGAGCCAATCAATAAAGACTTGGAGTTTCAGCTTCAGGACCCTTTCCTGCTTTACAGGAATGCAAGCTtgGGCATCTACAGTATCTGGTTCTACGACAAAGCGGACTGCCAGCGCATCGCCCAGCTGATGGTACAaATAGTGAAGCAGGAGGCACTGAGGGCTCAGCACACGTCCCCAGATCGGGGCAGAACTAATGGTTGTGTGGAGACCAGACCGCTGGATATACTGGAACTGCTGAGCAAGGCCAAGGAGGAGTACAACAGGaATCAGTCTAATGAGACTGATCTGCAGGTAAATCCAGATGTGGCTCAGACTTCAGATCCAATTAAAGTAGAGAACACAAAGCAGAGCATGACTGCTGCTCAGCAGGAGAAGCCCACCCACAGTGTGGTTAAGCAGATCACTGTAGAGGAGCTGTTTGGCAGCTCTTTACCCAAAGATCCAGCACCTCCAGTTCCACCTGGCCACAACCACTCCGAGCCCACCCCAGGCGAGAGCTTCCTCCAAAGGCTGACTTACGGCCCTCCTCCTCTCCCCCTGGAGCCTCTCCTCACTCCCCGCCTCACGGCTGATCCTGGAGGTCCAGGCCTGGTGCCTCTTCTCCAGGCTGGTGGCTCCCGGGACCCCCAGCACAGTGTTTCACCAAGACTTATGGCCCCGAGTGGCACAGAGAACGTTCCAGCACTCATAGGACCCCGAGGTCAGACTGGCCCTCAAGCTGCACCTCAGTATATAAATCCTGTTCAAGGGGAAGGGCATGGGATTCCCAAACCAGCTCCAGTGCCTGGCTTCATACCTAGCACACTGGTCACACCGCAGAGCTTCAGAGATCCCACACCTAAAGCTCCGGTTGCCTTTACCAGCACAGCACCTGCACAGACAAAAGAAGCAGATACTTTTGCACAGCCCCAGGCCCAGGGTCTTGTCAAAACCATACCTaagacaGGGCTAGGGGTGCCAGGATTGGAGGCTTTACTGCTTTCTCCCAGTGCGTTCCAGCAGTCTGCTGCAAAAGTACCTGAGCTTCAGAGACACCCCGCCCCCCCAGCATCACCGCCCAGCACCCTGGGGAGTGCAGAATTACCACCAGCATTGTACAACAAGACACAGCTGCAGGATGTTCTGATACATCTGATAaagAACGATGCCCATTTCCTTACTGCAATCCATGAGGCGTATTTGCAGAGCCTCTCCAAAGACCTCAACAACGTAAAGCTATAGCTGTAGACATCAACAAAGAACTCCAGGACTAATCACTTTTATCAGCCCCCTGCACTCCTCTCAGGAGGCCAGACACTCTGCTTCTAAAACGACAGAAAGCTAGACTGCAGCATTTAGCACAGAAAGCACCAGTATTACCAGACTAGCTGCGCTGGGTCCCCTTTGCTGTACCTTAGTCACTGGGTGGCACTTCTTCTAAAGACACACCACTGCTTCTACCAACAACCGCTGTGGACAAATTACTCCGAAAGTCTCCAGAATGTTTAACTGCCTCTGTTGACCCACCACTGAGCCACAGCGATTGGTCAACagctattattgttattgttgctattattattattattattattattattaaatgcaaatatagTGTGTACTTACATGCTTTCATTGTGGGAAAAGAGCctctttttattgctttatctTCCCCTGCGTCTTATGTTGTTCATGTCCTTTTTATTCCtaataatttagttattttacctCCATGTCTATTTTTAATATCAGAATTCCATCATTCTATCTTCCacctctgctttctctctcctcctcgCTCTGCCCACAAGCAGTTACCAAGGTTGTGAAAGTGTGCAATACTGGCAACCCTAAATTTGTtgctttttatattgtattgtaaagaCTGCTGTAATTTGAGCTGAGAGAGTGCACTTTTGCTTGAAGTTATGCATGGGCACAGACATGGACACAGTAATGGTATTTTTTTGATGGcctttagttattttttttattggttgttcatttattttttctgttgtaaaGGATTACAATTATAGTAACCTTGAACTAAAGTTTTGCAGTATTATTTACTGCAATGAGCTTAAtcgtttttgtttactttgttgcACTGAACAGTATAATTACATCTCCTTTAATGTAAATTAGTACCAAATTTGTTCCAAATTTGTTTGACTCTATCAATCAGGTATAAGGAGTTATGAAAGGCCTTTGCACCTTGTTCTGTGTCATTTGGCTTTTATTTATACAGATGCTCAGATATAATTTCAATTGAATtgcattaacaataaaataaagaaaacgaaAAAACAGTTTAGCAGTCGCTTAACAAAAGCAGGGTAATAGCCACTGGAGCAAAGTTATGTCCGAAGGCAGATAGCTTTTAAAGCCCCTGTATGAAATATATTCTGTATCATAGGTTTGTAACCTTTACATAAGTAGGTAAATGCAAAATGCATCCTTCAAGATACAGCAAACATATCTGCGATTGAATATCATCATAGGATATCACCATTTTGgtgtaatatatgtttttttatggtgaAGTGCCATGTTAAATGCCTCCACTATGTGGCGCATATCAGTATGGGTTGGTCTTGTTTAGTCCTGGTATCACTGTCTGTCTTAGTTGTGCGTCTAGACACATAGAGCTTGCGAAATTAAGAAAGGCGTTAAAGGTAATACAAAGCTTTCTTTCTGTACGCATGATGCTGTTGGTGAatttgtcttttgtctttttttttttttgccttagtGGTTCtaaatcaaattatttttttttttttgcaagcacCACCTGATGAAGAGATGCATAGAAAATTAAACACTGTGACAACACAGATTAATTTTATGAAAATGCCACTAAAGCAAACTGCACCACTGAAGTagcctttaaactttaaaaagctCATTGATGTTATGGAAAACATTGGTAAGCCATTTGTCAgatcacacattttatttttttttttcctcttttttttgtagttatGATGGATGTCAAACTAATttaatgctaaataaaactcttgcatcatCTCCAGA
>XM_007237028.3
TGTTCCCCTCAATTAGTTCCGTGCAGCCGCGGGCCAGTGTGCAAGATGGAGTCAGTGAATAAAGCGGGGCATCTGATGAGCCTGGCGGCTCTGCAGCACTACGACCCGTATATCAACAAGCTGCTCGACGTTACCGGACAGGTCGCGCTCTACAAGTTTAACTCTAAAGCCAGCGAGTGGGAAAAAACTGACATTGAAGgcactttatttgtttatgccAGGACAGCATCACCCCATCATGGGTTCACTATCATGAATCGTCTGAGCACAGAGAACTTGGTGGAGCCAATCAATAAAGACTTGGAGTTTCAGCTTCAGGACCCTTTCCTGCTTTACAGGAATGCAAGCTtgGGCATCTACAGTATCTGGTTCTACGACAAAGCGGACTGCCAGCGCATCGCCCAGCTGATGGTACAaATAGTGAAGCAGGAGGCACTGAGGGCTCAGCACACGTCCCCAGATCGGGGCAGAACTAATGGTTGTGTGGAGACCAGACCGCTGGATATACTGGAACTGCTGAGCAAGGCCAAGGAGGAGTACAACAGGGTAAATCCAGATGTGGCTCAGACTTCAGATCCAATTAAAGTAGAGAACACAAAGCAGAGCATGACTGCTGCTCAGCAGGAGAAGCCCACCCACAGTGTGGTTAAGCAGATCACTGTAGAGGAGCTGTTTGGCAGCTCTTTACCCAAAGATCCAGCACCTCCAGTTCCACCTGGCCACAACCACTCCGAGCCCACCCCAGGCGAGAGCTTCCTCCAAAGGCTGACTTACGGCCCTCCTCCTCTCCCCCTGGAGCCTCTCCTCACTCCCCGCCTCACGGCTGATCCTGGAGGTCCAGGCCTGGTGCCTCTTCTCCAGGCTGGTGGCTCCCGGGACCCCCAGCACAGTGTTTCACCAAGACTTATGGCCCCGAGTGGCACAGAGAACGTTCCAGCACTCATAGGACCCCGAGGTCAGACTGGCCCTCAAGCTGCACCTCAGTATATAAATCCTGTTCAAGGGGAAGGGCATGGGATTCCCAAACCAGCTCCAGTGCCTGGCTTCATACCTAGCACACTGGTCACACCGCAGAGCTTCAGAGATCCCACACCTAAAGCTCCGGTTGCCTTTACCAGCACAGCACCTGCACAGACAAAAGAAGCAGATACTTTTGCACAGCCCCAGGCCCAGGGTCTTGTCAAAACCATACCTaagacaGGGCTAGGGGTGCCAGGATTGGAGGCTTTACTGCTTTCTCCCAGTGCGTTCCAGCAGTCTGCTGCAAAAGTACCTGAGCTTCAGAGACACCCCGCCCCCCCAGCATCACCGCCCAGCACCCTGGGGAGTGCAGAATTACCACCAGCATTGTACAACAAGACACAGCTGCAGGATGTTCTGATACATCTGATAaagAACGATGCCCATTTCCTTACTGCAATCCATGAGGCGTATTTGCAGAGCCTCTCCAAAGACCTCAACAACGTAAAGCTATAGCTGTAGACATCAACAAAGAACTCCAGGACTAATCACTTTTATCAGCCCCCTGCACTCCTCTCAGGAGGCCAGACACTCTGCTTCTAAAACGACAGAAAGCTAGACTGCAGCATTTAGCACAGAAAGCACCAGTATTACCAGACTAGCTGCGCTGGGTCCCCTTTGCTGTACCTTAGTCACTGGGTGGCACTTCTTCTAAAGACACACCACTGCTTCTACCAACAACCGCTGTGGACAAATTACTCCGAAAGTCTCCAGAATGTTTAACTGCCTCTGTTGACCCACCACTGAGCCACAGCGATTGGTCAACagctattattgttattgttgctattattattattattattattattattaaatgcaaatatagTGTGTACTTACATGCTTTCATTGTGGGAAAAGAGCctctttttattgctttatctTCCCCTGCGTCTTATGTTGTTCATGTCCTTTTTATTCCtaataatttagttattttacctCCATGTCTATTTTTAATATCAGAATTCCATCATTCTATCTTCCacctctgctttctctctcctcctcgCTCTGCCCACAAGCAGTTACCAAGGTTGTGAAAGTGTGCAATACTGGCAACCCTAAATTTGTtgctttttatattgtattgtaaagaCTGCTGTAATTTGAGCTGAGAGAGTGCACTTTTGCTTGAAGTTATGCATGGGCACAGACATGGACACAGTAATGGTATTTTTTTGATGGcctttagttattttttttattggttgttcatttattttttctgttgtaaaGGATTACAATTATAGTAACCTTGAACTAAAGTTTTGCAGTATTATTTACTGCAATGAGCTTAAtcgtttttgtttactttgttgcACTGAACAGTATAATTACATCTCCTTTAATGTAAATTAGTACCAAATTTGTTCCAAATTTGTTTGACTCTATCAATCAGGTATAAGGAGTTATGAAAGGCCTTTGCACCTTGTTCTGTGTCATTTGGCTTTTATTTATACAGATGCTCAGATATAATTTCAATTGAATtgcattaacaataaaataaagaaaacgaaAAAACAGTTTAGCAGTCGCTTAACAAAAGCAGGGTAATAGCCACTGGAGCAAAGTTATGTCCGAAGGCAGATAGCTTTTAAAGCCCCTGTATGAAATATATTCTGTATCATAGGTTTGTAACCTTTACATAAGTAGGTAAATGCAAAATGCATCCTTCAAGATACAGCAAACATATCTGCGATTGAATATCATCATAGGATATCACCATTTTGgtgtaatatatgtttttttatggtgaAGTGCCATGTTAAATGCCTCCACTATGTGGCGCATATCAGTATGGGTTGGTCTTGTTTAGTCCTGGTATCACTGTCTGTCTTAGTTGTGCGTCTAGACACATAGAGCTTGCGAAATTAAGAAAGGCGTTAAAGGTAATACAAAGCTTTCTTTCTGTACGCATGATGCTGTTGGTGAatttgtcttttgtctttttttttttttgccttagtGGTTCtaaatcaaattatttttttttttttgcaagcacCACCTGATGAAGAGATGCATAGAAAATTAAACACTGTGACAACACAGATTAATTTTATGAAAATGCCACTAAAGCAAACTGCACCACTGAAGTagcctttaaactttaaaaagctCATTGATGTTATGGAAAACATTGGTAAGCCATTTGTCAgatcacacattttatttttttttttcctcttttttttgtagttatGATGGATGTCAAACTAATttaatgctaaataaaactcttgcatcatCTCCAGA
>XM_015602380.2
TTCCCCTCAATTAGTTCCGTGCAGCCGCGGGCCAGTGTGCAAGATGGAGTCAGTGAATAAAGCGGGGCATCTGATGAGCCTGGCGGCTCTGCAGCACTACGACCCGTATATCAACAAGCTGCTCGACGTTACCGGACAGGTCGCGCTCTACAAGTTTAACTCTAAAGCCAGCGAGTGGGAAAAAACTGACATTGAAGgcactttatttgtttatgccAGGACAGCATCACCCCATCATGGGTTCACTATCATGAATCGTCTGAGCACAGAGAACTTGGTGGAGCCAATCAATAAAGACTTGGAGTTTCAGCTTCAGGACCCTTTCCTGCTTTACAGGAATGCAAGCTtgGGCATCTACAGTATCTGGTTCTACGACAAAGCGGACTGCCAGCGCATCGCCCAGCTGATGGTACAaATAGTGAAGCAGGAGGCACTGAGGGCTCAGCACACGTCCCCAGATCGGGGCAGAACTAATGGTTGTGTGGAGACCAGACCGCTGGATATACTGGAACTGCTGAGCAAGGCCAAGGAGGAGTACAACAGGaATCAGTCTAATGAGACTGATCTGCAGGTAAATCCAGATGTGGCTCAGACTTCAGATCCAATTAAAGTAGAGAACACAAAGCAGAGCATGACTGCTGCTCAGCAGGAGAAGCCCACCCACAGTGTGGTTAAGCAGATCACTGTAGAGGAGCTGTTTGGCAGCTCTTTACCCAAAGATCCAGCACCTCCAGTTCCACCTGGCCACAACCACTCCGAGCCCACCCCAGGCGAGAGCTTCCTCCAAAGGCTGACTTACGGCCCTCCTCCTCTCCCCCTGGAGCCTCTCCTCACTCCCCGCCTCACGGCTGATCCTGGAGGTCCAGGCCTGGTGCCTCTTCTCCAGGCTGGTGGCTCCCGGGACCCCCAGCACAGTGTTTCACCAAGACTTATGGCCCCGAGTGGCACAGAGAACGTTCCAGCACTCATAGGACCCCGAGGTCAGACTGGCCCTCAAGCTGCACCTCAGTATATAAATCCTGTTCAAGGGGAAGGGCATGGGATTCCCAAACCAGCTCCAGTGCCTGGCTTCATACCTAGCACACTGGTCACACCGCAGAGCTTCAGAGATCCCACACCTAAAGCTCCGGTTGCCTTTACCAGCACAGCACCTGCACAGACAAAAGAAGCAGATACTTTTGCACAGCCCCAGGCCCAGGGTCTTGTCAAAACCATACCTacaGGGCTAGGGGTGCCAGGATTGGAGGCTTTACTGCTTTCTCCCAGTGCGTTCCAGCAGTCTGCTGCAAAAGTACCTGAGCTTCAGAGACACCCCGCCCCCCCAGCATCACCGCCCAGCACCCTGGGGAGTGCAGAATTACCACCAGCATTGTACAACAAGACACAGCTGCAGGATGTTCTGATACATCTGATAaagAACGATGCCCATTTCCTTACTGCAATCCATGAGGCGTATTTGCAGAGCCTCTCCAAAGACCTCAACAACGTAAAGCTATAGCTGTAGACATCAACAAAGAACTCCAGGACTAATCACTTTTATCAGCCCCCTGCACTCCTCTCAGGAGGCCAGACACTCTGCTTCTAAAACGACAGAAAGCTAGACTGCAGCATTTAGCACAGAAAGCACCAGTATTACCAGACTAGCTGCGCTGGGTCCCCTTTGCTGTACCTTAGTCACTGGGTGGCACTTCTTCTAAAGACACACCACTGCTTCTACCAACAACCGCTGTGGACAAATTACTCCGAAAGTCTCCAGAATGTTTAACTGCCTCTGTTGACCCACCACTGAGCCACAGCGATTGGTCAACagctattattgttattgttgctattattattattattattattattattaaatgcaaatatagTGTGTACTTACATGCTTTCATTGTGGGAAAAGAGCctctttttattgctttatctTCCCCTGCGTCTTATGTTGTTCATGTCCTTTTTATTCCtaataatttagttattttacctCCATGTCTATTTTTAATATCAGAATTCCATCATTCTATCTTCCacctctgctttctctctcctcctcgCTCTGCCCACAAGCAGTTACCAAGGTTGTGAAAGTGTGCAATACTGGCAACCCTAAATTTGTtgctttttatattgtattgtaaagaCTGCTGTAATTTGAGCTGAGAGAGTGCACTTTTGCTTGAAGTTATGCATGGGCACAGACATGGACACAGTAATGGTATTTTTTTGATGGcctttagttattttttttattggttgttcatttattttttctgttgtaaaGGATTACAATTATAGTAACCTTGAACTAAAGTTTTGCAGTATTATTTACTGCAATGAGCTTAAtcgtttttgtttactttgttgcACTGAACAGTATAATTACATCTCCTTTAATGTAAATTAGTACCAAATTTGTTCCAAATTTGTTTGACTCTATCAATCAGGTATAAGGAGTTATGAAAGGCCTTTGCACCTTGTTCTGTGTCATTTGGCTTTTATTTATACAGATGCTCAGATATAATTTCAATTGAATtgcattaacaataaaataaagaaaacgaaAAAACAGTTTAGCAGTCGCTTAACAAAAGCAGGGTAATAGCCACTGGAGCAAAGTTATGTCCGAAGGCAGATAGCTTTTAAAGCCCCTGTATGAAATATATTCTGTATCATAGGTTTGTAACCTTTACATAAGTAGGTAAATGCAAAATGCATCCTTCAAGATACAGCAAACATATCTGCGATTGAATATCATCATAGGATATCACCATTTTGgtgtaatatatgtttttttatggtgaAGTGCCATGTTAAATGCCTCCACTATGTGGCGCATATCAGTATGGGTTGGTCTTGTTTAGTCCTGGTATCACTGTCTGTCTTAGTTGTGCGTCTAGACACATAGAGCTTGCGAAATTAAGAAAGGCGTTAAAGGTAATACAAAGCTTTCTTTCTGTACGCATGATGCTGTTGGTGAatttgtcttttgtctttttttttttttgccttagtGGTTCtaaatcaaattatttttttttttttgcaagcacCACCTGATGAAGAGATGCATAGAAAATTAAACACTGTGACAACACAGATTAATTTTATGAAAATGCCACTAAAGCAAACTGCACCACTGAAGTagcctttaaactttaaaaagctCATTGATGTTATGGAAAACATTGGTAAGCCATTTGTCAgatcacacattttatttttttttttcctcttttttttgtagttatGATGGATGTCAAACTAATttaatgctaaataaaactcttgcatcatCTCCAGA

Function

symbol description
dcp1a Predicted to enable mRNA binding activity. Predicted to be involved in deadenylation-dependent decapping of nuclear-transcribed mRNA and deadenylation-independent decapping of nuclear-transcribed mRNA. Predicted to act upstream of or within nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and positive regulation of catalytic activity. Predicted to be located in nucleus. Predicted to be active in P-body. Orthologous to human DCP1A (decapping mRNA 1A).

NR:

description
PREDICTED: mRNA-decapping enzyme 1A

GO: NA

KEGG:

id description
K12610 DCP1A; mRNA-decapping enzyme 1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237027.3 True 3305 mRNA 0.44 10 47701250 47717549
XM_007237028.3 False 3279 mRNA 0.44 10 47701250 47717550
XM_015602380.2 False 3301 mRNA 0.44 10 47701250 47717548

Neighbor

gene id symbol gene type direction distance location
tkt tkt,LOC106571977 coding downstream 2780 47676442 ~ 47698470 (-)
gabrd gabrd,LOC107690714,LOC107711789,LOC107684467,LOC107739653 coding downstream 210475 47458020 ~ 47490775 (-)
LOC103039971 prickle2a,LOC108412058,LOC108265757,LOC107704215,LOC107548742,LOC107570338 coding downstream 621724 47033511 ~ 47079526 (-)
LOC103046313 NA coding downstream 718412 46970047 ~ 46982838 (-)
nadk nadk,LOC107757059 coding downstream 745899 46931365 ~ 46955351 (-)
chdh chdh coding upstream 144083 47861633 ~ 47879117 (-)
actr8 actr8,LOC107594971 coding upstream 178076 47895626 ~ 47910812 (-)
LOC103032709 LOC108411942 coding upstream 218956 47936506 ~ 47943996 (-)
lrtm1 lrtm1 coding upstream 612203 48329753 ~ 48349369 (-)
wnt5a wnt5a,LOC108411772,LOC107693599,LOC107553896,LOC107750813 coding upstream 772379 48489929 ~ 48508192 (-)
G59655 NA non-coding downstream 39893 47660194 ~ 47661357 (-)
G59654 NA non-coding downstream 41155 47654563 ~ 47660095 (-)
G59656 NA non-coding downstream 52952 47644995 ~ 47648298 (-)
G59643 NA non-coding downstream 73550 47575286 ~ 47627700 (-)
G59634 NA non-coding downstream 217505 47474334 ~ 47483745 (-)
G59677 NA non-coding upstream 168935 47886485 ~ 47888379 (-)
G59687 NA non-coding upstream 210242 47927792 ~ 47928375 (-)
G59702 NA non-coding upstream 241621 47959171 ~ 47959400 (-)
G59704 NA non-coding upstream 259648 47977198 ~ 47977584 (-)
G59705 NA non-coding upstream 260937 47978487 ~ 47978970 (-)
LOC111192697 NA other downstream 249858 47448958 ~ 47451392 (-)
LOC103040795 LOC108412055,LOC108265574,LOC105899021,LOC108412246 other downstream 286816 47196651 ~ 47414434 (-)
LOC103023429 LOC103023429,LOC108442352,LOC108265644,LOC107594970,LOC107549568,LOC107684464 other downstream 1019325 46603244 ~ 46681925 (-)
G59341 NA other downstream 1514356 46182741 ~ 46186894 (-)
nr2c2 nr2c2,LOC107757055,LOC107549572 other downstream 1651677 46025291 ~ 46049573 (-)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other upstream 98805 47816355 ~ 47919414 (-)
LOC103030200 cacna1e,LOC108265205,LOC108265123,LOC108265206 other upstream 1344969 49062519 ~ 49192025 (-)
G59951 NA other upstream 1587058 49304608 ~ 49305252 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other upstream 2847739 50565289 ~ 50630164 (-)
G60441 NA other upstream 3110145 50827695 ~ 50832200 (-)

Expression


Co-expression Network