LOC103032709 (LOC108411942)


Basic Information

Item Value
gene id LOC103032709
gene name LOC108411942
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 47936506 ~ 47943996 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237073.3
ttccagagctccTAATTTCCTTTACCATAGAGGAAGTGGGTTAATAAAGCAATCAAGAAGAGTGGCATCATAGATCATAGATTTCCCAGAGAATTAACTGGCAGAATAATTCCATGCATAATCCGGCTCTAAGAGTGTTCTCCAGGGACTTGTGTCACATACTAAGAAGCCATATTTGCTGAATCAAGTCTCCATAAAAGGTGAGGAGGGGTCTGATATGACCCCTTTAGTTAGGTTATTGTGCTACTGCATGTGGAACAGGCAGTACTTTATCTTTCTTATGAATCAGTTCTACCAGATCTTTCTTGAAGGAGCACTATTGTTGTGATACAAATCAAAAATGGACCACTCATCAGCTTTCACATCGGCTGCCACAATCTCCCAGGGGTCAGTAAATGATGAGATCATGCCAAGGATAGGTTACACCATTCTAGCCATCATTATTGGTTTCTTCTCGGTTTCTGGTGTCATCTTGAACGTGCTGGTGATTGTTGTGACGTTGAGACACAAACAGCTTCGTCAGCCGCTGAACTACGCTTTGGTAAACCTGGCAGTGGCAGATTTGGGCTGTGCTATGTTTGGAGGAATGCCAACCGTGATCACCAATGCCATGGGCTACTTCAGTCTGGGCAGGGTGGGATGTGTCCTAGAGGGCTTTGCAGTTGCTTTCTTTGGCATTGCCGCTTTGTGCTCGGTTGCCATCATCGCCATTGACCGCTACATGGTGGTTTGCAGACCCATGGGCACAGTCATGTTCCAGACCAGGCATGCAGTGACAGGAGTGGTCTTCTCCTGGGTTTGGTCTTTTGTGTGGAACACGCCTCCACTGTTCGGATGGGGAAGCTACCAGCTGGAAGGTGTGATGACCTCCTGCGCTCCTGATTGGTACAGCAGAGATCCAGTCAACGTCTCTTTCATCATGTGCTACTTCATGCTGTGTTTCGCCCTGCCTTTTATGACCATCGTCTTCTCCTACTCACGCCTCCTGTGGACCCTACGACAGGTAGCCAAACTGCAAATGGCAGAAAGTGGAAGCACTGCTAAGGCTGAAATGCAGGTGGTACGTATGGTGGTTGTGATGGTCCTGGCCTTCCTGCTCACATGGTTGCCCTATGCTTCTTTTGCCCTTGCTGTGATCTTTAATGCGGACCTTTACATTGACCCACTGATTGCCACGGTTCCCATGTATCTGGCCAAAAGCAGCACCATCTTCAACCCTATTATCTACATCTTCATGAACAGACAGTTCAGGGACTGTGCCGTGCCATATCTCTTCTGTGGGAGAAACCCCTGGGCAGCCAAACCTGGAGAGTCTGAGGTGGAAACGACAATGACTTCAATCAGCAAGAGCAACAAGATTTCACCATCGTCTCCAGCCTCTGACACACAGCCTTctaccacataaacacacagtggtGTAACAGGTCCAGACTGGAGCCAAATCCCCGTACAATGTCACTTCTCCACTGCTGTTAAAAAGGATTTCAGGGTTGTTCAATTCCACACttaattaacttttattaatgACTCTGCTGAGCGCTTTGCTCCCTTGATAGCTTCACTGGAATTTTGTTCGTCTAAATCCCTCAAAGAAGAAAGCTAA

Function

NR:

description
PREDICTED: parapinopsin-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237073.3 True 1603 mRNA 0.47 4 47936506 47943996

Neighbor

gene id symbol gene type direction distance location
actr8 actr8,LOC107594971 coding downstream 25694 47895626 ~ 47910812 (-)
chdh chdh coding downstream 57389 47861633 ~ 47879117 (-)
dcp1a dcp1a coding downstream 218956 47701250 ~ 47717550 (-)
tkt tkt,LOC106571977 coding downstream 238036 47676442 ~ 47698470 (-)
gabrd gabrd,LOC107690714,LOC107711789,LOC107684467,LOC107739653 coding downstream 445731 47458020 ~ 47490775 (-)
lrtm1 lrtm1 coding upstream 385757 48329753 ~ 48349369 (-)
wnt5a wnt5a,LOC108411772,LOC107693599,LOC107553896,LOC107750813 coding upstream 545933 48489929 ~ 48508192 (-)
erc2 NA coding upstream 578253 48522249 ~ 48902841 (-)
tlr9 NA coding upstream 967992 48911988 ~ 48917131 (-)
apeh apeh,LOC107730641,LOC105013991 coding upstream 973786 48917782 ~ 48937325 (-)
G59687 NA non-coding downstream 8131 47927792 ~ 47928375 (-)
G59677 NA non-coding downstream 48127 47886485 ~ 47888379 (-)
G59655 NA non-coding downstream 275149 47660194 ~ 47661357 (-)
G59654 NA non-coding downstream 276411 47654563 ~ 47660095 (-)
G59656 NA non-coding downstream 288208 47644995 ~ 47648298 (-)
G59702 NA non-coding upstream 15175 47959171 ~ 47959400 (-)
G59704 NA non-coding upstream 33202 47977198 ~ 47977584 (-)
G59705 NA non-coding upstream 34491 47978487 ~ 47978970 (-)
G59744 NA non-coding upstream 60446 48004442 ~ 48005172 (-)
G59752 NA non-coding upstream 378225 48322221 ~ 48327265 (-)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 17092 47816355 ~ 47919414 (-)
LOC111192697 NA other downstream 485114 47448958 ~ 47451392 (-)
LOC103040795 LOC108412055,LOC108265574,LOC105899021,LOC108412246 other downstream 522072 47196651 ~ 47414434 (-)
LOC103023429 LOC103023429,LOC108442352,LOC108265644,LOC107594970,LOC107549568,LOC107684464 other downstream 1254581 46603244 ~ 46681925 (-)
G59341 NA other downstream 1749612 46182741 ~ 46186894 (-)
LOC103030200 cacna1e,LOC108265205,LOC108265123,LOC108265206 other upstream 1118523 49062519 ~ 49192025 (-)
G59951 NA other upstream 1360612 49304608 ~ 49305252 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other upstream 2621293 50565289 ~ 50630164 (-)
G60441 NA other upstream 2883699 50827695 ~ 50832200 (-)
LOC103032656 LOC108413501 other upstream 3472224 51416220 ~ 51508580 (-)

Expression


Co-expression Network