RNA id: XM_007237073.3


Basic Information

Item Value
RNA id XM_007237073.3
length 1603
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC103032709
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 47936506 ~ 47943996 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttccagagctccTAATTTCCTTTACCATAGAGGAAGTGGGTTAATAAAGCAATCAAGAAGAGTGGCATCATAGATCATAGATTTCCCAGAGAATTAACTGGCAGAATAATTCCATGCATAATCCGGCTCTAAGAGTGTTCTCCAGGGACTTGTGTCACATACTAAGAAGCCATATTTGCTGAATCAAGTCTCCATAAAAGGTGAGGAGGGGTCTGATATGACCCCTTTAGTTAGGTTATTGTGCTACTGCATGTGGAACAGGCAGTACTTTATCTTTCTTATGAATCAGTTCTACCAGATCTTTCTTGAAGGAGCACTATTGTTGTGATACAAATCAAAAATGGACCACTCATCAGCTTTCACATCGGCTGCCACAATCTCCCAGGGGTCAGTAAATGATGAGATCATGCCAAGGATAGGTTACACCATTCTAGCCATCATTATTGGTTTCTTCTCGGTTTCTGGTGTCATCTTGAACGTGCTGGTGATTGTTGTGACGTTGAGACACAAACAGCTTCGTCAGCCGCTGAACTACGCTTTGGTAAACCTGGCAGTGGCAGATTTGGGCTGTGCTATGTTTGGAGGAATGCCAACCGTGATCACCAATGCCATGGGCTACTTCAGTCTGGGCAGGGTGGGATGTGTCCTAGAGGGCTTTGCAGTTGCTTTCTTTGGCATTGCCGCTTTGTGCTCGGTTGCCATCATCGCCATTGACCGCTACATGGTGGTTTGCAGACCCATGGGCACAGTCATGTTCCAGACCAGGCATGCAGTGACAGGAGTGGTCTTCTCCTGGGTTTGGTCTTTTGTGTGGAACACGCCTCCACTGTTCGGATGGGGAAGCTACCAGCTGGAAGGTGTGATGACCTCCTGCGCTCCTGATTGGTACAGCAGAGATCCAGTCAACGTCTCTTTCATCATGTGCTACTTCATGCTGTGTTTCGCCCTGCCTTTTATGACCATCGTCTTCTCCTACTCACGCCTCCTGTGGACCCTACGACAGGTAGCCAAACTGCAAATGGCAGAAAGTGGAAGCACTGCTAAGGCTGAAATGCAGGTGGTACGTATGGTGGTTGTGATGGTCCTGGCCTTCCTGCTCACATGGTTGCCCTATGCTTCTTTTGCCCTTGCTGTGATCTTTAATGCGGACCTTTACATTGACCCACTGATTGCCACGGTTCCCATGTATCTGGCCAAAAGCAGCACCATCTTCAACCCTATTATCTACATCTTCATGAACAGACAGTTCAGGGACTGTGCCGTGCCATATCTCTTCTGTGGGAGAAACCCCTGGGCAGCCAAACCTGGAGAGTCTGAGGTGGAAACGACAATGACTTCAATCAGCAAGAGCAACAAGATTTCACCATCGTCTCCAGCCTCTGACACACAGCCTTctaccacataaacacacagtggtGTAACAGGTCCAGACTGGAGCCAAATCCCCGTACAATGTCACTTCTCCACTGCTGTTAAAAAGGATTTCAGGGTTGTTCAATTCCACACttaattaacttttattaatgACTCTGCTGAGCGCTTTGCTCCCTTGATAGCTTCACTGGAATTTTGTTCGTCTAAATCCCTCAAAGAAGAAAGCTAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80482 lncRNA downstream 8131 47927792 ~ 47928375 (-) True G59687
TU80472 lncRNA downstream 48127 47886485 ~ 47888379 (-) True G59677
TU80441 lncRNA downstream 275149 47660194 ~ 47661357 (-) True G59655
TU80440 lncRNA downstream 276411 47654563 ~ 47660095 (-) True G59654
TU80443 lncRNA downstream 288208 47644995 ~ 47648298 (-) True G59656
TU80504 lncRNA upstream 15175 47959171 ~ 47959400 (-) True G59702
TU80506 lncRNA upstream 33202 47977198 ~ 47977584 (-) True G59704
TU80507 lncRNA upstream 34491 47978487 ~ 47978970 (-) True G59705
TU80550 lncRNA upstream 60446 48004442 ~ 48005172 (-) True G59744
TU80558 lncRNA upstream 378225 48322221 ~ 48327265 (-) True G59752
XM_007237002.3 mRNA downstream 17092 47912532 ~ 47919414 (-) True selenok
XM_007237003.3 mRNA downstream 25694 47895626 ~ 47910812 (-) True actr8
XM_007237005.3 mRNA downstream 57389 47861633 ~ 47879117 (-) True chdh
XM_007237028.3 mRNA downstream 218956 47701250 ~ 47717550 (-) False dcp1a
XM_007237000.2 mRNA upstream 385757 48329753 ~ 48349369 (-) True lrtm1
XM_007236999.3 mRNA upstream 545933 48489929 ~ 48508192 (-) True wnt5a
XM_022670821.1 mRNA upstream 578253 48522249 ~ 48902841 (-) False erc2
XM_022670818.1 mRNA upstream 578253 48522249 ~ 48902841 (-) False erc2
XM_022670815.1 mRNA upstream 578253 48522249 ~ 48902841 (-) False erc2
TU80460 other downstream 17125 47816355 ~ 47919381 (-) False selenok
TU80461 other downstream 17125 47843007 ~ 47919381 (-) False selenok
XR_002650096.1 other downstream 935842 46999584 ~ 47000664 (-) True LOC111192695
TU80091 other downstream 1254595 46623612 ~ 46681911 (-) False LOC103023429
TU79995 other downstream 1749612 46182741 ~ 46186894 (-) True G59341
TU80719 other upstream 1118625 49062621 ~ 49083933 (-) False LOC103030200
TU80777 other upstream 1360612 49304608 ~ 49305252 (-) True G59951
TU81451 other upstream 2883699 50827695 ~ 50832200 (-) True G60441
TU81746 other upstream 3762342 51706338 ~ 51708112 (-) True G60627

Expression Profile