LOC103030200 (cacna1e,LOC108265205,LOC108265123,LOC108265206)


Basic Information

Item Value
gene id LOC103030200
gene name cacna1e,LOC108265205,LOC108265123,LOC108265206
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49062519 ~ 49192025 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU80719
CTCCGTTTGAGTATATGATTCTGGCGACTATCATCGCTAACTGCATCGTTCTGGCTCTGGAGCAGCACCTGCCTGCAGAAGACAAGACCCCCATGTCCAGGAGACTGGAAAAAACGGAGCCCTACTTTATCGGGATGTTCTGTTTTGAAGCGGGAATAAAGATCGTAGCTTTGGGATTCGTGTTCCATAAAGGATCGTACCTGAGGAACGGCTGGAATGTGATGGATTTCATCGTGGTGCTTAGCGGGATTCTGGCCACAGCTGGAGCTCATATGAACATCCCAGTGGACCTGCGGACGCTGAGGGCGGTACGAGTGCTGAGACCGCTGAAACTGGTGTCCGGAATTCCCAgtctACAAATTGTGCTGAAGTCCATCATGAAGGCCATGGTGCCTCTGCTGCAGATTGGCCTGTTGCTGTTCTTCGCCATCCTCATGTTCGCCATCATCGGTCTGGAGTTCTACAGCGGACGCCTGCACAGCACCTGCCTACCCGCTGCAGATATACGAGGTAACATCTCTTTACTTCATCTCTTtggtttattatataaaataaaaa
>XM_022670825.1
CCAGCCACATCTGCACGAGCCACTTACTTTCTATCGCTCAGCCACCGCcagtctgcacacacacacgcactcacacacacacacacacacacacacacacacacacacactcacacgctgATTCAGAGACAGGGATCAGGAGAACCGGGAGAACAGAGCTCAGGCTGGATTCAGGAGGAGTTGGGCTTCTGTTGGGGTTCTGGGTCAGAGTTAATATTCCTGACATTCCCAGAGGGAGAGGATGGAGCTGAGAACAGCACACGCAGCGTGATGCTGAGACCCTGGCAGGATGCTGgagctgagtgtgtgttctgagaGGGATGCGCGTACTGGTGGCTCTCAGACCCTCTCTGAACGCCATGCCCGGGTCACGCCAGGCAGCGCCTCGCCCACGCCGAGCTTCCTGCTGCAGGACCCGGAGGGCTGGTATAAACACCGGGGGACGCTGCAGGATGGTGCGCTGCTGGAGCCGCAGGCTCCGGCCGGCGGGCCGCTCGcacacacctccacctccaGCCTGCACACGCTCTGCGTGCCCTGCGCCCCCACCTCGCTGGAGCTGGGGGAGGCGGAGCTGCCCGTCAGCCCCAACGTCATTAAGCGGCGCAGGGGTGGACTCATCGAGCAGCGGGACATCATTAAAGCCCACCAGGCCCACAAAATCCACAGCACCCCACAGGCCCGCCGCAAGGAGTGGGAGATGGCTCGCTTCGGAGACGATGTTCCGGGGCTGCTGGTTGCCATGGACACCGGGTCCGAGCGCAGCCGCACCCGGGAAGCGCCCGCCGTCTCCACCGGAGGGGTCTCACCCGTCTTCAAACAGACCAAAGCGCAGCGAGCGCGCACCATGGCCCTGTACAATCCCATCCCCGTCCGGCAGAACTGCTTCACCGTCAACAGGTCGCTCTTCATCTTCAGCGAGGATAACGTGGTCAGGAAGTACGCCAAGAAGATCATAGAGTGGCCTCCGTTTGAGTATATGATTCTGGCGACTATCATCGCTAACTGCATCGTTCTGGCTCTGGAGCAGCACCTGCCTGCAGAAGACAAGACCCCCATGTCCAGGAGACTGGAAAAAACGGAGCCCTACTTTATCGGGATGTTCTGTTTTGAAGCGGGAATAAAGATCGTAGCTTTGGGATTCGTGTTCCATAAAGGATCGTACCTGAGGAACGGCTGGAATGTGATGGATTTCATCGTGGTGCTTAGCGGGATTCTGGCCACAGCTGGAGCTCATATGAACATCCCAGTGGACCTGCGGACGCTGAGGGCGGTACGAGTGCTGAGACCGCTGAAACTGGTGTCCGGAATTCCCAgtctACAAATTGTGCTGAAGTCCATCATGAAGGCCATGGTGCCTCTGCTGCAGATTGGCCTGTTGCTGTTCTTCGCCATCCTCATGTTCGCCATCATCGGTCTGGAGTTCTACAGCGGACGCCTGCACAGCACCTGCCTACCCGCTGCAGATATACGAGGTAACATCTCTTTACTTCATCTCTTtggtttattatataaaataaaaacctgcTATATTATTGTAAGAAGGCGGGCTAGGCGGGGCTACACCTTGGAATGGAAGTGATTGACAGACAGACCGTGGCTGGAACTGACCGGTTATCTGtatt

Function

symbol description
cacna1e Enables voltage-gated calcium channel activity. Predicted to be involved in calcium ion import and chemical synaptic transmission. Predicted to act upstream of or within several processes, including behavioral fear response; regulation of peptide hormone secretion; and visual learning. Predicted to be located in plasma membrane. Predicted to be part of voltage-gated calcium channel complex. Predicted to be active in GABA-ergic synapse. Predicted to be integral component of postsynaptic membrane and integral component of presynaptic membrane. Implicated in developmental and epileptic encephalopathy 69.

NR:

description
PREDICTED: voltage-dependent R-type calcium channel subunit alpha-1E-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80719 False 558 TUCP 0.50 4 49062621 49083933
XM_022670825.1 True 1625 mRNA 0.58 7 49062519 49192025

Neighbor

gene id symbol gene type direction distance location
LOC103035796 bsn,LOC108265177,LOC107698426 coding downstream 91381 48939737 ~ 48971138 (-)
apeh apeh,LOC107730641,LOC105013991 coding downstream 125194 48917782 ~ 48937325 (-)
tlr9 NA coding downstream 145388 48911988 ~ 48917131 (-)
erc2 NA coding downstream 159678 48522249 ~ 48902841 (-)
wnt5a wnt5a,LOC108411772,LOC107693599,LOC107553896,LOC107750813 coding downstream 554327 48489929 ~ 48508192 (-)
acbd6 acbd6,LOC107665066,LOC107603185,LOC107758008 coding upstream 163512 49355537 ~ 49420407 (-)
LOC103029024 LOC108411638,LOC107603148 coding upstream 423296 49615321 ~ 49623205 (-)
LOC103027347 doc2d,LOC108413517,LOC108265638,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113 coding upstream 623199 49815224 ~ 49868068 (-)
lonrf1 lonrf1 coding upstream 724626 49916651 ~ 49928619 (-)
LOC103027049 jak3 coding upstream 821078 50013103 ~ 50052446 (-)
G59872 NA non-coding downstream 3191 49058951 ~ 49059328 (-)
G59862 NA non-coding downstream 16532 49045238 ~ 49045987 (-)
LOC111192741 NA non-coding downstream 19510 49041244 ~ 49043009 (-)
G59856 NA non-coding downstream 24453 49037673 ~ 49038066 (-)
G59827 NA non-coding downstream 81383 48980665 ~ 48981136 (-)
G59923 NA non-coding upstream 6400 49198425 ~ 49198720 (-)
G59940 NA non-coding upstream 77049 49269074 ~ 49271242 (-)
G60227 NA non-coding upstream 231448 49423473 ~ 49437382 (-)
G60229 NA non-coding upstream 284660 49476685 ~ 49476907 (-)
G60235 NA non-coding upstream 334913 49526938 ~ 49568740 (-)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 1143105 47816355 ~ 47919414 (-)
LOC111192697 NA other downstream 1611127 47448958 ~ 47451392 (-)
LOC103040795 LOC108412055,LOC108265574,LOC105899021,LOC108412246 other downstream 1648085 47196651 ~ 47414434 (-)
LOC103023429 LOC103023429,LOC108442352,LOC108265644,LOC107594970,LOC107549568,LOC107684464 other downstream 2380594 46603244 ~ 46681925 (-)
G59341 NA other downstream 2875625 46182741 ~ 46186894 (-)
G59951 NA other upstream 112583 49304608 ~ 49305252 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other upstream 1373264 50565289 ~ 50630164 (-)
G60441 NA other upstream 1635670 50827695 ~ 50832200 (-)
LOC103032656 LOC108413501 other upstream 2224195 51416220 ~ 51508580 (-)
LOC103045940 slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205 other upstream 2347473 51539498 ~ 51580634 (-)

Expression


Co-expression Network