RNA id: TU80424


Basic Information

Item Value
RNA id TU80424
length 781
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G59643
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 47575286 ~ 47627700 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGAACTCATTtggggtgcgtttcccgaTAGCGATTGTTCTTAGGGATTTAAGAACAACTTTAAGAACGACTTAACTTTAAGAACGCCATTTTTCCGACTGTTTCCAGAAGCCACTCTTAAGTCTCCATACTTACGAAGGACCTTTAAGTAGCACTTTGGTGGCTCCGCCCCCGTGTCTGTGAGGTTTAAGGCAAAGCCAGATGAAAACTAGACCACCGATTTATATACAGTTCTTCATTATTAAGCCACAAAGGTATAATTTTGTATGATATAAAAagccaaataaaatatatttacttatttgtttaCTACTACGACTGTCAGACTGGGGAAAACCGTTAATTTAATCCATATGTGTGTGATATGTgtgaataaaaattatatttgtagGTAATTGTAACTTTTTCTTCACGTGAATACGATTATTTCAACCatataataaacccaaatactATGAATAAATATGCGCaggttaataaattaatttaaatagtctggaatttagtcttttttttattgtttatttttttataaatacgtATGCTGAATGCatctttaaatgcatttttttaaggatCAAAAGCGGCCTCTTTCGTTTTTGAGTCAGAACTGCACGTGGATTCCACGTTAAGAAGAACTTAGTTATTTACGAGTGGGTCAGACCACTCGTAAAGTTACGAACGAGTTTAAGTACTACGTTAGTTACGAAGGCTTTCGGGAAACGCTCGTAATTTTAAGATTGTTCGTAAGTACGAAGTTACGAAGTACTTAGCGTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80415 lncRNA downstream 91541 47474334 ~ 47483745 (-) True G59634
TU80412 lncRNA downstream 123932 47449641 ~ 47451354 (-) False LOC111192697
TU80403 lncRNA downstream 250237 47323675 ~ 47325049 (-) True G59622
TU80401 lncRNA downstream 254731 47319779 ~ 47320555 (-) True G59620
TU80391 lncRNA downstream 324514 47247880 ~ 47250772 (-) True G59611
TU80443 lncRNA upstream 17295 47644995 ~ 47648298 (-) True G59656
TU80440 lncRNA upstream 26863 47654563 ~ 47660095 (-) True G59654
TU80441 lncRNA upstream 32494 47660194 ~ 47661357 (-) True G59655
TU80472 lncRNA upstream 258785 47886485 ~ 47888379 (-) True G59677
TU80482 lncRNA upstream 300092 47927792 ~ 47928375 (-) True G59687
XM_007237020.3 mRNA downstream 84511 47458020 ~ 47490775 (-) False gabrd
XM_007237019.3 mRNA downstream 84511 47458020 ~ 47490775 (-) True gabrd
XM_022670800.1 mRNA downstream 123894 47448958 ~ 47451392 (-) True LOC111192697
XM_022670798.1 mRNA downstream 160852 47205974 ~ 47414434 (-) False LOC103040795
XM_022670799.1 mRNA downstream 160853 47205974 ~ 47414433 (-) False LOC103040795
XM_022670804.1 mRNA upstream 48742 47676442 ~ 47698470 (-) True tkt
XM_007237028.3 mRNA upstream 73550 47701250 ~ 47717550 (-) False dcp1a
XM_007237027.3 mRNA upstream 73550 47701250 ~ 47717549 (-) True dcp1a
XM_015602380.2 mRNA upstream 73550 47701250 ~ 47717548 (-) False dcp1a
XM_007237005.3 mRNA upstream 233933 47861633 ~ 47879117 (-) True chdh
XR_002650096.1 other downstream 574622 46999584 ~ 47000664 (-) True LOC111192695
TU80091 other downstream 893375 46623612 ~ 46681911 (-) False LOC103023429
TU79995 other downstream 1388392 46182741 ~ 46186894 (-) True G59341
TU79950 other downstream 1525713 46042791 ~ 46049573 (-) False nr2c2
TU79350 other downstream 2513612 45061109 ~ 45061674 (-) True G58868
TU80460 other upstream 188655 47816355 ~ 47919381 (-) False selenok
TU80461 other upstream 215307 47843007 ~ 47919381 (-) False selenok
TU80719 other upstream 1434921 49062621 ~ 49083933 (-) False LOC103030200
TU80777 other upstream 1676908 49304608 ~ 49305252 (-) True G59951
TU81451 other upstream 3199995 50827695 ~ 50832200 (-) True G60441

Expression Profile