RNA id: TU80391


Basic Information

Item Value
RNA id TU80391
length 526
lncRNA type intronic
GC content 0.37
exon number 2
gene id G59611
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 47247880 ~ 47250772 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAGTGAGAAATTAAGAATAAATTAACTTCGTGCTCTGAATAGAGAAAACAGTGTTGCTGACTGGGGGGGAGGACGCGTGAGACTTCAGCGTTATGTTTTTACAGAAACCGCTAATGCCATCTGCAATATTTATGAAGATActggatggagatggagataaTGCCACAAGCACacactaactaacacacacacacgcacatgctAATTTGTCATTTGGAAATATATGTGGGCCTCCACAGGCAGGAGGATGCATTAATGATCATTTGATTGACGTGTGTCCGGCTGTGTgggaatatattattttaatgtagatttttttccaGTGGAATCACTtactgtgtggtgtgtatagtggtaCACACTGAATTAACAGAGCTCGATCTGTTCAATCTGAacttaaaataccaaaaaaaaaacaagccctTGAATAAACACTGCATTGGATAAGAACAtccataattaaaatatataataaaaaaatacaggtggcAAAAACATTAGATTTAAAGTAGGCGAAAAACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80383 lncRNA downstream 33000 47196651 ~ 47214880 (-) False LOC103040795
TU80208 lncRNA downstream 221948 47024011 ~ 47025932 (-) True G59486
XR_002650095.1 lncRNA downstream 248698 46998175 ~ 46999182 (-) False LOC111192694
XR_002650094.1 lncRNA downstream 248698 46998175 ~ 46999182 (-) True LOC111192694
TU80160 lncRNA downstream 282921 46962499 ~ 46964959 (-) True G59450
TU80401 lncRNA upstream 69007 47319779 ~ 47320555 (-) True G59620
TU80403 lncRNA upstream 72903 47323675 ~ 47325049 (-) True G59622
TU80412 lncRNA upstream 198869 47449641 ~ 47451354 (-) False LOC111192697
TU80415 lncRNA upstream 223562 47474334 ~ 47483745 (-) True G59634
TU80424 lncRNA upstream 324514 47575286 ~ 47627700 (-) True G59643
XM_022670787.1 mRNA downstream 168354 47033511 ~ 47079526 (-) True LOC103039971
XM_007237030.3 mRNA downstream 265042 46970047 ~ 46982838 (-) True LOC103046313
XM_007237042.3 mRNA downstream 292529 46931365 ~ 46955351 (-) False nadk
XM_022670800.1 mRNA upstream 198186 47448958 ~ 47451392 (-) True LOC111192697
XM_007237020.3 mRNA upstream 207248 47458020 ~ 47490775 (-) False gabrd
XM_007237019.3 mRNA upstream 207248 47458020 ~ 47490775 (-) True gabrd
XM_022670804.1 mRNA upstream 425670 47676442 ~ 47698470 (-) True tkt
XM_007237028.3 mRNA upstream 450478 47701250 ~ 47717550 (-) False dcp1a
XR_002650096.1 other downstream 247216 46999584 ~ 47000664 (-) True LOC111192695
TU80091 other downstream 565969 46623612 ~ 46681911 (-) False LOC103023429
TU79995 other downstream 1060986 46182741 ~ 46186894 (-) True G59341
TU79950 other downstream 1198307 46042791 ~ 46049573 (-) False nr2c2
TU79350 other downstream 2186206 45061109 ~ 45061674 (-) True G58868
TU80460 other upstream 565583 47816355 ~ 47919381 (-) False selenok
TU80461 other upstream 592235 47843007 ~ 47919381 (-) False selenok
TU80719 other upstream 1811849 49062621 ~ 49083933 (-) False LOC103030200
TU80777 other upstream 2053836 49304608 ~ 49305252 (-) True G59951
TU81451 other upstream 3576923 50827695 ~ 50832200 (-) True G60441

Expression Profile