G59450 (LOC103046622,LOC108412057)


Basic Information

Item Value
gene id G59450
gene name LOC103046622,LOC108412057
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46962499 ~ 46964959 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU80160
TTCTGGCCGATCTGGTAATTTGCAATTCCTTTTAGGTAGCGAATGCATGTGCTTCTGTCTTTGGAGTTGGAGGGGTTCTTCTTACTGTGTCGTAAAACTTTTGTGAATGCAACCTTTAGGTGCTGGTCCACTGTTTTTAAGTGGAAATACTTTGTATTGTAGAACATTAAAGTTGTAAGAAGTGTGGACGGCGAATGAGCTCCCAGTTGTTTGCATTCCCATAACATCTCTTCAGTCACATGACTGGGGATAAtgtaacctaAAGGATGGATGGCGGGTTGCCATGAGTCCATTATCTTGTGCAGTGATTGGTGGAAGCGATGATAATAGCGGTCTGTGAAGATGTTGTCTACTCTACCATTATCATCCATGTACTTTTGTATACAGAGAAAGATATAGAAGAGCATATCAGCTTCCAAAGTCTCCTCCTCTAAACCTCTGGCCTCCTGCGTCATTAACGACAAGCCTAAACTCATCTCTGCTACAGAACTGGACAGCAGGTCCTCCTGAAACCGCAACTGTTGCCgccTGCCAATAGGAGCAAGTGTGTTCCTTTGCTCCGTCTCCAGTTCAGAATTCTTCTTCTGAGCCCATAGTCTCCACTCCATAAGCCCCTCCTCCGGCTTTAGAGAGACAAGTAGCGCCTCACTTTCAGGCACATCCTGTGCCT

Function

NR:

description
glutamine-rich protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80160 True 670 lncRNA 0.46 5 46962499 46964959

Neighbor

gene id symbol gene type direction distance location
nadk nadk,LOC107757059 coding downstream 7148 46931365 ~ 46955351 (-)
slc35e2b slc35e2b,s35e2,LOC108265386,LOC108442346 coding downstream 55416 46883277 ~ 46907083 (-)
LOC103047530 cdk11a,LOC108265382 coding downstream 80656 46852018 ~ 46881843 (-)
ubiad1 ubiad1,LOC107718257,LOC107572294,LOC107575167 coding downstream 137897 46819143 ~ 46824602 (-)
mib2 mib2 coding downstream 148868 46715553 ~ 46813631 (-)
LOC103046313 NA coding upstream 5088 46970047 ~ 46982838 (-)
LOC103039971 prickle2a,LOC108412058,LOC108265757,LOC107704215,LOC107548742,LOC107570338 coding upstream 68552 47033511 ~ 47079526 (-)
gabrd gabrd,LOC107690714,LOC107711789,LOC107684467,LOC107739653 coding upstream 493061 47458020 ~ 47490775 (-)
tkt tkt,LOC106571977 coding upstream 711483 47676442 ~ 47698470 (-)
dcp1a dcp1a coding upstream 736291 47701250 ~ 47717550 (-)
G59444 NA non-coding downstream 37300 46924911 ~ 46925199 (-)
G59435 NA non-coding downstream 59714 46876568 ~ 46902785 (-)
G59422 NA non-coding downstream 144895 46817344 ~ 46817604 (-)
G59404 NA non-coding downstream 362953 46599213 ~ 46599546 (-)
G59402 NA non-coding downstream 363994 46597713 ~ 46598505 (-)
LOC111192694 NA non-coding upstream 33216 46998175 ~ 46999182 (-)
LOC111192695 NA non-coding upstream 34625 46999584 ~ 47000664 (-)
G59486 NA non-coding upstream 59052 47024011 ~ 47025932 (-)
G59611 NA non-coding upstream 282921 47247880 ~ 47250772 (-)
G59620 NA non-coding upstream 354820 47319779 ~ 47320555 (-)
LOC103023429 LOC103023429,LOC108442352,LOC108265644,LOC107594970,LOC107549568,LOC107684464 other downstream 280574 46603244 ~ 46681925 (-)
G59341 NA other downstream 775605 46182741 ~ 46186894 (-)
nr2c2 nr2c2,LOC107757055,LOC107549572 other downstream 912926 46025291 ~ 46049573 (-)
G58868 NA other downstream 1900825 45061109 ~ 45061674 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067 other downstream 2340425 44586306 ~ 44622074 (-)
LOC103040795 LOC108412055,LOC108265574,LOC105899021,LOC108412246 other upstream 231692 47196651 ~ 47414434 (-)
LOC111192697 NA other upstream 483999 47448958 ~ 47451392 (-)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other upstream 851396 47816355 ~ 47919414 (-)
LOC103030200 cacna1e,LOC108265205,LOC108265123,LOC108265206 other upstream 2097560 49062519 ~ 49192025 (-)
G59951 NA other upstream 2339649 49304608 ~ 49305252 (-)

Expression


Co-expression Network