LOC111192694


Basic Information

Item Value
gene id LOC111192694
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46998175 ~ 46999182 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650094.1
ATACATTGGTTAAAGAATACATGGCAGCTGAGGATCTGAGGCAGTCCATAAAGCTGAAGCCAGATGTCAAAAGGTGAGCGGTAAATGGGGAGAGAGAAGATTAGGATAAAGAATGGTTGGTCGTTTCTGAGTGAAGGTTTGGAGAGGGTTGGATAGGAGAGGAGTAAACCTTACCCTTATCCAGGAGCTTAGGAGAGAGGAGAGCAGTCTCTGCAGTCGCACCAGAAATCCCTGTATTAAAGTGAGGAGATCAACCTCAGTGGGGGATCAACCCATAAACATGTGAGGGACATTGAATCCAGAGAGGCTGACATTGCAGAGAAGACTATGGGAATCTACACTGTCTGAACAGAGGGACATGGTCC
>XR_002650095.1
ATACATTGGTTAAAGAATACATGGCAGCTGAGGATCTGAGGCAGTCCATAAAGCTGAAGCCAGATGTCAAAAGGTGAGCGGTAAATGGGGAGAGAGAAGATTAGGATAAAGAATGGTTGGTCGTTTCTGAGTGAAGGTTTGGAGAGGGTTGGATAGGAGAGGAGTAAACCTTACCCTTATCCAGGAGCTTAGGAGAGAGGAGTCTCTGCAGTCGCACCAGAAATCCCTGTATTAAAGTGAGGAGATCAACCTCAGTGGGGGATCAACCCATAAACATGTGAGGGACATTGAATCCAGAGAGGCTGACATTGCAGAGAAGACTATGGGAATCTACACTGTCTGAACAGAGGGACATGGTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650094.1 True 365 lncRNA 0.47 5 46998175 46999182
XR_002650095.1 False 360 lncRNA 0.47 5 46998175 46999182

Neighbor

gene id symbol gene type direction distance location
LOC103046313 NA coding downstream 15337 46970047 ~ 46982838 (-)
nadk nadk,LOC107757059 coding downstream 42824 46931365 ~ 46955351 (-)
slc35e2b slc35e2b,s35e2,LOC108265386,LOC108442346 coding downstream 91092 46883277 ~ 46907083 (-)
LOC103047530 cdk11a,LOC108265382 coding downstream 116332 46852018 ~ 46881843 (-)
ubiad1 ubiad1,LOC107718257,LOC107572294,LOC107575167 coding downstream 173573 46819143 ~ 46824602 (-)
LOC103039971 prickle2a,LOC108412058,LOC108265757,LOC107704215,LOC107548742,LOC107570338 coding upstream 34329 47033511 ~ 47079526 (-)
gabrd gabrd,LOC107690714,LOC107711789,LOC107684467,LOC107739653 coding upstream 458838 47458020 ~ 47490775 (-)
tkt tkt,LOC106571977 coding upstream 677260 47676442 ~ 47698470 (-)
dcp1a dcp1a coding upstream 702068 47701250 ~ 47717550 (-)
chdh chdh coding upstream 862451 47861633 ~ 47879117 (-)
G59450 LOC103046622,LOC108412057 non-coding downstream 33216 46962499 ~ 46964959 (-)
G59444 NA non-coding downstream 72976 46924911 ~ 46925199 (-)
G59435 NA non-coding downstream 95390 46876568 ~ 46902785 (-)
G59422 NA non-coding downstream 180571 46817344 ~ 46817604 (-)
G59404 NA non-coding downstream 398629 46599213 ~ 46599546 (-)
LOC111192695 NA non-coding upstream 402 46999584 ~ 47000664 (-)
G59486 NA non-coding upstream 24829 47024011 ~ 47025932 (-)
G59611 NA non-coding upstream 248698 47247880 ~ 47250772 (-)
G59620 NA non-coding upstream 320597 47319779 ~ 47320555 (-)
G59622 NA non-coding upstream 324493 47323675 ~ 47325049 (-)
LOC103023429 LOC103023429,LOC108442352,LOC108265644,LOC107594970,LOC107549568,LOC107684464 other downstream 316250 46603244 ~ 46681925 (-)
G59341 NA other downstream 811281 46182741 ~ 46186894 (-)
nr2c2 nr2c2,LOC107757055,LOC107549572 other downstream 948602 46025291 ~ 46049573 (-)
G58868 NA other downstream 1936501 45061109 ~ 45061674 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067 other downstream 2376101 44586306 ~ 44622074 (-)
LOC103040795 LOC108412055,LOC108265574,LOC105899021,LOC108412246 other upstream 197469 47196651 ~ 47414434 (-)
LOC111192697 NA other upstream 449776 47448958 ~ 47451392 (-)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other upstream 817173 47816355 ~ 47919414 (-)
LOC103030200 cacna1e,LOC108265205,LOC108265123,LOC108265206 other upstream 2063337 49062519 ~ 49192025 (-)
G59951 NA other upstream 2305426 49304608 ~ 49305252 (-)

Expression


Co-expression Network