RNA id: XM_007237020.3


Basic Information

Item Value
RNA id XM_007237020.3
length 4129
RNA type mRNA
GC content 0.45
exon number 9
gene id gabrd
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 47458020 ~ 47490775 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagtgagtgagagagagagagagagagagagagggggagagataGAGCGCGCGCTGGTGCTGGTGGTGTGGGAGAGTGAGTTTAACGCAGCGCTTGGAACTGAAGTTGGCTGAGGGGTCGGATGTATTCTGATGGAACATGTCTGTTCTCGGCGGTTCTCTGTGTTCAGCTCCTCTAACCCGGGTTTCTTAGCCTCTCCTGCGGGGAAAAGTTGAAGATGGACGCGCTGACTCTGCTCCTCGTGCGGTTCCTCGCGCTGTTTCTCGGAGGGAAGCAGGTGGTGAGGGCGATGCTGAGTGACATTGGTGACTATGTAGGTACAGACATTGAGATTTCCTGGTTGCCTAATCTGGATGACTTAATGAAAGGCTATGCTCGAAACTTTCGGCCGGGGATAGGAGGACCTCCAGTGAATGTGGCCATGGCTATTGAAGTAGCTAGCATTGACCATATCTCAGAAGCCAACATGGAGTACACTATGACAGTGTTCCTGCGTCAGAGTTGGCGAGACGACCGTCTGTCCTACAACCATACGAACAAGACCCTGGGGCTGGACAGCCGCTTTGTAGATAAACTCTGGCTACCGGACACATTCATCGTCAACGCCAAGTCAGCCTGGTTCCATGACGTCACGGTGGAAAACAAGCTCATACGCTTGCAACCTGATGGGGTCATCCTCTACAGcagccgAATCACGTCCACAGTAGCCTGTGACATGGACCTGACCAAGTACCCCATGGACGAACAGGAATGCATGCTGGACCTGGAGAGCTATGGATACTCTTCAGAGGACATTGTATATCACTGGTCAGAGAGTCAGAAATACATCCACGGCCTGGACAAACTGGAGCTGTCCCAGTTCACTATTACAGACTACCGCTTCGTCACCGAGATTATGAACTTCAAATCAGctggaaGATTTCCTCGTCTCAGCCTGCGTTTCGAGTTGAGGAGAAATAGAGGAGTTTACATCATCCAGTCCTACATGCCCTCCATCCTGCTGGTAGCTATGTCATGGGTCTCTTTCtggatcagccaatcagctgtcCCTGCAAGAGTGTCGCTAgGGATCACCACAGTGCTCACCATGACAACCCTGATGGTCAGCGCTCGCTCCTCGCTGCCCCGCGCCTCCGCCATAAAAGCCCTGGATGTCTATTTCTGGATCTgctatgtgtttgtgtttgctgCTCTGATTGAGTACGCCTTCGCCCACTACAACGCCGACTACAGCAAGAAAGAGAAAGCCAAGGTCAAAGCAAACAAGagtgctgagAACCGAGCGCAGCGCCCCTCGGAGACGCCGGCGGAGCCGCAGGACGAGGCGGAGACCCGCAGTGCCCGTGTGCGGCGAGCCGAGCGCGAGAGCAGCCAGGAGAAGAAGTGCTGCAAGTGCAAGCCCATCGACGCCGACACCATCGACATCTACGCCCGCGCCGTCTTCCCTTTCACCTTCGCCGTGGTCAACGTCATCTACTGGGTGGCTTACACCATGTGACTTACAGAGGCCTCAGCACTGGATGCATGTAAATAGATCAGTAAAGCGATGTGGTGCCAAAGCCATGTGACCATGGgggatttaacatttttatgacACTGGATTAACAGGATGATCAAACACTGGGACTGATGGAATGACTAGACTttcatgtatatttataaaGCCAGACTGTCGTGTTGTTTTGGAGAGCTGATCTTCAGCTGGACTCACTGATGAGAAGCTGCAGAGAAGCTCAGTATTCAGtcagagaaaaggagaaaaaagaggaaattatGAGAAAGTGCCACAAGAACTGCTTTGTATTGAGAACTTTGGACCTCGCTTTTGCACCCTCAACCtttttttcagttgtttttcTTCATGTGTTCCTATATTTTGTGTTGCAGTTGGTTCTGAACTCGCCTCTGCAGCATCTGCCCCAGTGTCCTCAAATTAgaaatttcaacacatttcaagaGTGTGATGATCAAATGATTGACACACAGTGTTGCATGACGGCTGTagtatgttttgtttgttattaaCCCATTTTAATTCACATCAGTTCCCATTCTTTCGGTTTTTGAGTACAGAATCTGtctaattattaatcaatagCAATTCAAGCAAAACTGAGCAAGTCTATGTCTATAAATATTATGACCATCTCCTTGTTTATCTCCTATACACACTGTCCACCTTATCAGCTCCACTTACTGTTTAGGCacactagagcttagatcagccTCCAAAAATCCAGCCCGACTCGACCTGAGCCCGGTCCGTCCCATTATCTGTCATTATGTCATTATAGACCGATTTAAACCCTACATTAATTCAGTAAGTAGAGCtttaaaactgatattttaACAACAATTATGAGCTGTAGGTTTCTGTACTTTCTGCACTTTTTGATTTCTGCCTCCAAAAGTTTCCATTATCTTGCCTGACTTCTGCCAGTATCTTACCAGTATCACATCCCCACGAGGTGCCTAGTGCACCAATTAAGCGACATTTGAAGCTCttaattataacattattaGCATGATTATATCTTTATAACTTATCATTATTACAaagatcacagtgtgatttgttgtATTAAAAACATAGGTCTAagttacaaatacattttatgagCCCAACCCTACAGAGCCaaaggaaagtggtgggaattCTCAGCCCCAGTTCGAGTTCAGGCGCTCGAGTTTGGACAGATAATCTGAACTCTAAGGCAGCGTGTAGTTGAATGATTACAGACTATAATCTGAATAGTCTTctatttctctgcatactttataatCACTGTATTTTCTCACTATATTTTATCGGTCAGAACCTCACAGGATAGACCACtacaaatcagatatttttattctCTGCACTGCAGTGACGTTGACATGATAGTGGTTGTGATAGTGGTGttggtacaagtggatcagatacagcagtgctgctggtgtttttaaactcatcagtgtcactgctagactgagaatagtccaccagaACTACAAGAAAAATCCAgacaacagcatcctgtgggcagcatcctggcCAGCATTCTGTATGCAGCATTCTGGGGCCATCATTCTGTAGGCAGTTtattgtgggcagtgtcctgagggcAGCATCCTGGCCAGCATTCTGTGGGAAATGTCCTGTGGGCTGCATCCTGTGGAGAATGTCTTGtaagcagcatcctgtgggcagtgtcctgtgggcagtgtcctatAAGCTGCGTCCTGTGGACAGCATtctgtaactactgatgaaggactagagtttgaccaacactgtaaactgtggagcaacagattcagatcttctgtctctgactttactttatctgtaAGGTGTTTCAGCTGAAGgcaggagtgtgtaatagagtagaggatagtgagagattaaacacagtgtttaaaaactccagcagcactgctgtatctgatccactagctgtaccagcacaacacacactaacacctcatgcACCACCAGCATGCTGATCAGAGCTTCTACAGACAAGGAGGTGTTCGTAATATTCTGGCTTGACTGTGTTGTCATCTAATTCgtattttttctctcacttgaaaataatgttttaatgaattCCACTTTGGTGAATGAAGAGCTAAAGACCACACGTTAAGTAAGGAACCTGTTGTGGTGTGAATGTACTGAACCCGGAAGACCTTAGGCCTGTGTTCTATCAGTGAACCAAGCCATATAAGATACATTATGATCAGTGTTATGAATAACCTCAACAACCTTAATGCATGTTAGTATACACAATACCTTCTACCTTAGCATAGCAGATAGCATACTctagatttattcatttatttattatatgaagATTAAACACAAAGTAATGATAtaagaatttatttattagaaCCCTATCCCCTATTACTTCCCCTCACTGATAAACTTAGGTATCTTACATGCTGCAAAATTGCAGTGCTGTAACCCGTCTGTTATCATGCACAAAATACTGCACCACACAATGTAAAAGGGTGCGGGAGGGGTGCTGAAAatatttttggaaaatgtatttaaaaataaaaattaatgatATAAACAATGgtctgtttttatgtttattttccaAATAAAGGTATACAAGATACAGCTTGACAAACTGAA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80412 lncRNA downstream 6666 47449641 ~ 47451354 (-) False LOC111192697
TU80403 lncRNA downstream 132971 47323675 ~ 47325049 (-) True G59622
TU80401 lncRNA downstream 137465 47319779 ~ 47320555 (-) True G59620
TU80391 lncRNA downstream 207248 47247880 ~ 47250772 (-) True G59611
TU80383 lncRNA downstream 243140 47196651 ~ 47214880 (-) False LOC103040795
TU80424 lncRNA upstream 84511 47575286 ~ 47627700 (-) True G59643
TU80443 lncRNA upstream 154220 47644995 ~ 47648298 (-) True G59656
TU80440 lncRNA upstream 163788 47654563 ~ 47660095 (-) True G59654
TU80441 lncRNA upstream 169419 47660194 ~ 47661357 (-) True G59655
TU80472 lncRNA upstream 395710 47886485 ~ 47888379 (-) True G59677
XM_022670800.1 mRNA downstream 6628 47448958 ~ 47451392 (-) True LOC111192697
XM_022670798.1 mRNA downstream 43586 47205974 ~ 47414434 (-) False LOC103040795
XM_022670788.1 mRNA downstream 43587 47202838 ~ 47414433 (-) True LOC103040795
XM_022670804.1 mRNA upstream 185667 47676442 ~ 47698470 (-) True tkt
XM_007237028.3 mRNA upstream 210475 47701250 ~ 47717550 (-) False dcp1a
XM_007237027.3 mRNA upstream 210475 47701250 ~ 47717549 (-) True dcp1a
XM_015602380.2 mRNA upstream 210475 47701250 ~ 47717548 (-) False dcp1a
XM_007237005.3 mRNA upstream 370858 47861633 ~ 47879117 (-) True chdh
XR_002650096.1 other downstream 457356 46999584 ~ 47000664 (-) True LOC111192695
TU80091 other downstream 776109 46623612 ~ 46681911 (-) False LOC103023429
TU79995 other downstream 1271126 46182741 ~ 46186894 (-) True G59341
TU79950 other downstream 1408447 46042791 ~ 46049573 (-) False nr2c2
TU79350 other downstream 2396346 45061109 ~ 45061674 (-) True G58868
TU80460 other upstream 325580 47816355 ~ 47919381 (-) False selenok
TU80461 other upstream 352232 47843007 ~ 47919381 (-) False selenok
TU80719 other upstream 1571846 49062621 ~ 49083933 (-) False LOC103030200
TU80777 other upstream 1813833 49304608 ~ 49305252 (-) True G59951
TU81451 other upstream 3336920 50827695 ~ 50832200 (-) True G60441

Expression Profile