G60439


Basic Information

Item Value
gene id G60439
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 50789307 ~ 50798394 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU81442
cacactctctctctctcacacacactctctctctcagacacacactctctctctcacacacacactctctctctcacacacacactctctctctcacacacacactctctctctcacacacacactctctctctcacacaccacactctctctcacacacacactctctctcacacacacacactctctctctcacacacacactctctctctctcacacacactctctctctcacacacactctctctctctcacacacacactctctctctcacacacacactctctctctctcacacacactctctctctc
>TU81444
cactctctctctcacacacactctctctctctcacacactctctctctcacacacactctctctcacacacacactctctctctcacacacacactctctctctcacacacacactctctctctcacacacacactctctctctcacacacacactctctctctcacacacacacactctctctctcacacacacactctctctctctcacacacacactctctctctcacacacactctctctctcacacacactctctctctctct
>TU81445
cactctctctctcacacacactctctctctctcacacactctctctctcacacacactctctctcacacacacactctctctctcacacacacactctctctctcacacacacactctctctctcacacacacactctctctctcacacacacactctctctctcacacacactctctctctctcacacacactctctctctctcacacacacactctctctctcacacacactctctctctcacacacactctctctctcacacacacactctctctctcacacacacactctctctctctcacacacactctctctctc
>TU81446
cactctctctctcacacacactctctctctctcacacactctctctctcacacacactctctctcacacacacactctctctctcacacacacactctctctctcacacacacactctctctctcacacacacactctctctctcacacacacactctctctctcacacacactctctctctctcacacacactctctctctc
>TU81448
acacacactctctctctctcacacacactctctctctctcacacacacactctctctctcacacacactctctctctcacacacactctctctctcacacacacactctctctctcacacacacactctctctctctcacacacactctctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81442 False 314 lncRNA 0.50 3 50789492 50797727
TU81444 False 268 lncRNA 0.50 3 50789307 50798394
TU81445 True 321 lncRNA 0.50 4 50789492 50798394
TU81446 False 203 lncRNA 0.50 3 50789492 50798394
TU81448 False 156 lncRNA 0.50 2 50789492 50789728

Neighbor

gene id symbol gene type direction distance location
LOC103044996 prkcz,LOC107743854,LOC107710919 coding downstream 52055 50657611 ~ 50737252 (-)
LOC103046724 cept1a,LOC108413601,LOC107598985,LOC107665002,LOC107725317 coding downstream 342413 50437158 ~ 50446894 (-)
LOC103047029 LOC108413599 coding downstream 360163 50423063 ~ 50429144 (-)
sap30bp sap30bp coding downstream 454294 50314559 ~ 50335013 (-)
itgb4 itgb4,LOC108414649,LOC108415682 coding downstream 477252 50273668 ~ 50312055 (-)
fgd1 fgd1,LOC107552218,LOC108266043 coding upstream 418447 51216841 ~ 51272731 (-)
LOC103030869 LOC108440552,LOC108265824 coding upstream 477909 51276303 ~ 51286169 (-)
LOC111192719 NA coding upstream 647805 51446199 ~ 51460739 (-)
LOC103032967 LOC108441106 coding upstream 661042 51459436 ~ 51475848 (-)
abtb1 abtb1,LOC107674366,LOC107696919 coding upstream 803918 51602312 ~ 51616374 (-)
G60429 NA non-coding downstream 37968 50750686 ~ 50751339 (-)
G60422 NA non-coding downstream 47142 50739355 ~ 50742165 (-)
G60417 NA non-coding downstream 73565 50714003 ~ 50715742 (-)
G60354 NA non-coding downstream 175090 50608284 ~ 50614217 (-)
G60355 NA non-coding downstream 184368 50603681 ~ 50604939 (-)
G60440 NA non-coding upstream 2599 50800993 ~ 50801507 (-)
G60442 NA non-coding upstream 36686 50835080 ~ 50837319 (-)
G60457 NA non-coding upstream 67761 50866155 ~ 50872466 (-)
G60444 NA non-coding upstream 93758 50892152 ~ 50897009 (-)
G60445 NA non-coding upstream 98792 50897186 ~ 50899078 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other downstream 159143 50565289 ~ 50630164 (-)
G59951 NA other downstream 1484055 49304608 ~ 49305252 (-)
LOC103030200 cacna1e,LOC108265205,LOC108265123,LOC108265206 other downstream 1597282 49062519 ~ 49192025 (-)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 2869893 47816355 ~ 47919414 (-)
LOC111192697 NA other downstream 3337915 47448958 ~ 47451392 (-)
G60441 NA other upstream 29301 50827695 ~ 50832200 (-)
LOC103032656 LOC108413501 other upstream 617826 51416220 ~ 51508580 (-)
LOC103045940 slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205 other upstream 741104 51539498 ~ 51580634 (-)
G60627 NA other upstream 907944 51706338 ~ 51708112 (-)
LOC103028851 LOC108440537,LOC107674333,LOC108265526,LOC107584878,LOC107727418,LOC107743115 other upstream 1686035 52484429 ~ 52524184 (-)

Expression


Co-expression Network