LOC103046724 (cept1a,LOC108413601,LOC107598985,LOC107665002,LOC107725317)


Basic Information

Item Value
gene id LOC103046724
gene name cept1a,LOC108413601,LOC107598985,LOC107665002,LOC107725317
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 50437158 ~ 50446894 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236944.3
tagactgttttagttttattttgtcaCACAGGGAGTGGATTACTTCCGTCCTCTTCATGCTGCTGATCTGAACCGCGTGTGGACCTTTTTTACGGGTTTAACACTAAATAATCACCCAGATTTCTAATAGGAGAGGATCTCATCTCATTGATCTGCAGGTTCTGCGTGGGTTCTCTGCACTGTGTTTAGAACATATTAGCTTTAGCACTGCACACAGTTATGACCTCAAGCAGTCGGAGGAACCCCCTGAGAGCCCGTCCGGGAGCCCTTTCAGAGAACAGCTCGAACTCTCGGTCAGACCCCACCCCCTCTGCAGCTGGGGCGGATGAAGGGTCGGGGATGCTGGGGTGGCTGATGGAGCTGCCGGTGGCGCGGTTATCCCGGCAGCAGCTGAAGCATCTGGAGGAGCATCGCTACAGCAGCATGGGCCAGTCCCTGCTGGAGCCCTGCGTGCAGCCGTTCTGGTGCTGGCTGGTGGGTCAGGTTCCTCTGTGGATGGCGCCGAACCTCATCACCATCGTGGGGCTCGCAGTCAACGCTATCACCACCCTCATCCTCGTCTACCACTGCCCCACAGCCACCGAGCAGGCACCCACATGGGCGTATCTGGCCTGTGCTTTGGGTCTGTTTATTTACCAATCACTGGATGCCATTGATGGTAAGCAGGCCAGACGGACCAATAGCAGCTCTCCACTCGGCGAACTCTTCGACCACGGCTGCGACTCCCTTTCCACTGtgttTGTAGTTTTGGGGACGTGTATAGCTGTACAGTTGGGGACGAATCCGGACTGGATGTTCTTCTGCTGTTTTGCTGGAATCTTCATGTTCTACTGCGCTCACTGGCAGACCTACGTCTCCGGAACTCTGCGCTTTGGAATAATCGATGTGACTGAGGTGCAAATCTTCATTATAAGCTTGTATTTGCTGGGTGCCGTCGGAGGAACAGCTTTTTGGCAATATGTGATTCCAGTTTTAAACATCCAGATTAAAATCATTCCTGCCATCTTCACTCTGCTGGGGGCCATTTTCTCCTGTACGAACTACTTCCGGGTCATTTTCTCGGGCGGAATGGGCAAAAACGGATCCACTGTTGCGGGAACGAGTGTACTGTCCCCAGCCTTCCACATCGGAGTGGTGACTGCTCTGGCTCTGCTGACCTATAAGATGTCGAGTGAGCAGCTGTTCCAGAAGCACCCCTGCCTCTACATACTAGCTTTCGGCTTCGCATCTGCTAAGATTACCAACCGACTAGTgGTTGCTCATATGACTAAATGTGAAATGCATCGTAATGACTTGGCCTTTCTGAGTCCGCTGCTGCTGTTCCTGAATCAGTATTTCAGCTACTTCCGTGAACACAGCATCCTCTGGGTGGCGCTGgTTTTGGCTGGTTTTGATCTGGTCCGCTactgcgtgagtgtgtgtaacCAGATCGCTGCCCACCTAAACATCAGTGTGTTCAGCCTCCGCAAGCCGGAACCTTCTAAACAAgaataccacaacaaccactaacatatatacacatatacacacacacacacacacaccccacacacacactccgtccCTCTGCAGGTCAGTTCTTACAAAGAATGTAACAAATTCAGAAACTAAACACAGCCGGATTTACACAGAGTTTTGgaataacaataatttaacaGGTTAAGGGGAATTGCtacgagttttttttttacatgctgcGTTCGCTTTATGTTTGGTTCACAGTGTGTTATTTAAGTTAACAGTTTCTAGCCTGAACTTCTAGTTTGTGGCATTTTTATAACAGTTACACAGAGTCTGAGGGAGAGGTGAAGAAGTTACTGTAGGGAGAAACTGGAAGGAGAAGTTACTGTAATGCTGCTAAACACAGCAGTCACAATACCCGAGTCAGCGATACACAAAACCCAGCGgttacaactttttttgtttgtttgttcatttgtttttgtttttttttacaggctgCTTATTAGGCAAGTCTGGGTGTTGAGAACCCCAGCTGGTATTCCTGTGGAAACCCTTCACTAAACCAGTGAAGCTAAAGCTAATTAGGGTCTCTGTGAACGTGGCGTTAGCCTGAGAAGAAAGCAGCTAAATTTTACAGAGTGTGTTTAAACTACAGTATAgttaataaaaggtaaaaaaacaaaaaagagtttCTAAATTTCTCTTACACCAAATGTAGTTGATCAGCCAATACATGCAATGCACTGGTGAGCTTCAGTGCTAATGAAGCTAACTAGCAATGGAAGCCAATAATCCACCAATTAGCAATGGAGCATTGTtgctaataaacagtaattgaCAAGTTAATGGAGCCTATATTCCACTGGTTAGCAGTGGAATTACAgctaaaaaagaaatagaatatttttctgcattacatttacctcagatttacCTCAGAGTTTAGGGCATTCTATATAAGTCAGCTATCATTGTTaacattgtcccaggttagcattgctagCGAGGGCAGTTGATAACAACACATTATGGTGTCTTGTGCATCCAAACAGCTAGGAAACATATCTACTGACAGAAAGTGGAGCATACTGCGTGTAGAAATGATGTAATCAGACAGTAATAAATAGAAGATGATAGATGATAAACCGTAAAATAATcctgcttttactactgttgctGTGCGGGCCGCCATCTTGAATTTGGAACTGAGGGTTTGCAAGGCAAAACAGTTCCACACAGTTTGAGAAGAGTATATGATGATTTAGACATCCAGTTGGTACCATGCTATTTGGTGGATTATAAACTTTcagcatttgttttttattccatTACATGTTTTGACTGATTAACTACATTTTGTTTAACATAGCAGAACAGGCTAAATAATGGTAGATCTGAAAGTATGTAGTGTTCTTTATTAAAGCCCCTGAgaatctga

Function

symbol description
cept1a Predicted to enable diacylglycerol cholinephosphotransferase activity and ethanolaminephosphotransferase activity. Predicted to be involved in phosphatidylethanolamine biosynthetic process. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum membrane. Orthologous to human CEPT1 (choline/ethanolamine phosphotransferase 1).

NR:

description
PREDICTED: choline/ethanolaminephosphotransferase 1-like

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016780 phosphotransferase activity, for other substituted phosphate groups molecular_function

KEGG:

id description
K00993 EPT1; ethanolaminephosphotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236944.3 True 2902 mRNA 0.45 9 50437158 50446894

Neighbor

gene id symbol gene type direction distance location
LOC103047029 LOC108413599 coding downstream 8014 50423063 ~ 50429144 (-)
sap30bp sap30bp coding downstream 102145 50314559 ~ 50335013 (-)
itgb4 itgb4,LOC108414649,LOC108415682 coding downstream 125103 50273668 ~ 50312055 (-)
slc5a5 slc5a5 coding downstream 367380 50055267 ~ 50069778 (-)
LOC103027049 jak3 coding downstream 384712 50013103 ~ 50052446 (-)
LOC103044996 prkcz,LOC107743854,LOC107710919 coding upstream 210717 50657611 ~ 50737252 (-)
fgd1 fgd1,LOC107552218,LOC108266043 coding upstream 769947 51216841 ~ 51272731 (-)
LOC103030869 LOC108440552,LOC108265824 coding upstream 829409 51276303 ~ 51286169 (-)
LOC111192719 NA coding upstream 999305 51446199 ~ 51460739 (-)
LOC103032967 LOC108441106 coding upstream 1012542 51459436 ~ 51475848 (-)
G60390 LOC108413600,LOC107725316,LOC107599027,LOC107557198 non-coding downstream 16867 50388547 ~ 50420291 (-)
G60386 NA non-coding downstream 65690 50371057 ~ 50371468 (-)
G60339 NA non-coding downstream 243678 50167511 ~ 50193480 (-)
G60326 NA non-coding downstream 359951 50016514 ~ 50077207 (-)
G60325 NA non-coding downstream 436057 50000860 ~ 50001101 (-)
G60402 NA non-coding upstream 89534 50536428 ~ 50597469 (-)
G60352 NA non-coding upstream 128214 50575108 ~ 50625614 (-)
G60349 NA non-coding upstream 131865 50578759 ~ 50588887 (-)
G60405 NA non-coding upstream 143889 50590783 ~ 50593394 (-)
G60350 NA non-coding upstream 151922 50598816 ~ 50600640 (-)
G59951 NA other downstream 1131906 49304608 ~ 49305252 (-)
LOC103030200 cacna1e,LOC108265205,LOC108265123,LOC108265206 other downstream 1245133 49062519 ~ 49192025 (-)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 2517744 47816355 ~ 47919414 (-)
LOC111192697 NA other downstream 2985766 47448958 ~ 47451392 (-)
LOC103040795 LOC108412055,LOC108265574,LOC105899021,LOC108412246 other downstream 3022724 47196651 ~ 47414434 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other upstream 118395 50565289 ~ 50630164 (-)
G60441 NA other upstream 380801 50827695 ~ 50832200 (-)
LOC103032656 LOC108413501 other upstream 969326 51416220 ~ 51508580 (-)
LOC103045940 slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205 other upstream 1092604 51539498 ~ 51580634 (-)
G60627 NA other upstream 1259444 51706338 ~ 51708112 (-)

Expression


Co-expression Network