G60326


Basic Information

Item Value
gene id G60326
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 50016514 ~ 50077207 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU81289
tagcgttcaaactatgaatctcacattataaaaacctgcttaacagcgggccaactttcattctatttctaaaataccttaggcctttaaaatgtgcagagcagGGTGAAGCCAGGTCCGggactgagaaacactgatatTCAAGATTTAAGGCCTTAAAGCAATAGTTTAGACAGCCCTCATCTCGAATGTAGTCTCAAAAGTTTGGTGCTATGgagttatataatataaaaaatgctaCTGTTCTATCAAGCAGTTCTAGAAAGTGTGGTCAGTTATGGGATACAGTCATGGTATGGTAATCTTTCAGTGAAGTTAAAATCTCAGCTCATGTATGTGGTCAAGACTGCTATGGAGATTAAGGGGAAAAAGAACATCTCCATCTTCCTCCATCTTTAAAACccattaatttgattaaacttaaaacttttgtAACCAGTtacttaattcatttaaaattcatgtaatataatttcaaGTACAGTGAACtctacaaatacatatacatatatattaaaaaagaagatattcctgaacttatatatttttactctcAGTACTGCATACTACATTGATTTTAGTaagaattaaataatgaaaaaatatttccaCCAACTTAAccagaacacaaaatatatgatagtattttatttttaaactatttatatcAATTGCTTTGCATAAAAATTCTATTTTGAATATGATGGTCAGGTGAATAAAAATTgtagatttgtatttagtcttcttttttattttattcaactaTTTTTCTAAATACTCATAATCCAAGCAGCTAATCATAATAGGTCACccggggggaatcactacacactgatggtgagtgtctgtcagaaactgttgaacacacccaatatgcaaatagattgtgacagaagccaatggaaaagaagctgccaatggaaaCAGATtgaactcagttattataagttggttcaactcaaagatctcagtttaaaagTATACGTGCTCACAGATGTTCagttaactcaaaatagttgagtaatatttagaaatatatattttatatatagttcaaacaacttctgggtttacagtgtgtgctTTACCATAAATACCAACTCCTCCCCTCGGGTAGAAGTTATAGGATGACTAGATGCCAGCTAAAAAGTTATAGGAATTCTTTTGTtccaatttttttaaaccttaaatcttaaataataAGGTATAGGATCTGTGAAACACAGCTCATGGTTGTGTttaagaaaatgtgcaatatttaCATGGACTAGGATACGCAAACAGAGAAGACGGACGTGAACGCAGacaatcatttattaaacaaacaagataaactacatcaaaacagaaagcaaacacGGATAGAGAAACgtaaaaacaatcaaacaagaCAAAGCAAACTAAACTACAAAGACAAGGCTAGTCTTTGTGGATCgattaaacaaaactaaaaaaaacaagaaacagtaGAACTGAAACCAGACTaggagcttaaaaaaaaaaacacacactgtgaatacacaaagcaaacaaagaattagaataaaaatagtatGGATACAAAAAATCCAAATACACAAACCAGACATGAAGGCGAACAAAAGACTCGGACTAGTggcactgaaacaaaggggcttactgtattttttttacactaaaaggtgcacttaaaaaccttatgtatgaattttaccagtgtTGTTGTAATAAGTAGttaagccactctgctgaagtgcagcgctATACTgaattttcagtttagttctccagcagtattagcgttAAGCCGCTAACCTCGCTAAGTGCCagctctttttttccatttagaggtgagtattatcgacctgtagcccTGCTGCGAACTAttacccagcagtgagacctgctgaattagaaggaaaacatggcgacccCCCTatttcttactagtgtcacataatgcaccttataatccatcTCATGTACTTTACCATGAATACCAACTCCTCCTCCTCGGGTAGAAGGTACAGGATGACTAGATGCCAGCTGAATAGATATAGGAACTCTTTTGTTCCAGTTTCTAttaatcttaaatcttaaataataAGGAATAGGGTCTGTTCTACACTGCTCATTGTTGTGTTtgaaaaaatgtgcaatatagACAAGGTCTAGATTTGTCTAATGCAGTTGTCATGTACGAAAAAGGAGAAGACGTCTGTAAAGGtagataattatttattaaacctaTCAAcctttagcctgctgctaactagCACTgatgaagcagcattagcattaactgtcccaagcgctagctcttttgctattcAGAGGAGTATTATCGACCTCTAACTGGCTGcttaccccagctagcacttctggagcagcattagcattagctgcttaccatgctaagcgctagctcttttgccattcagaggtgagtattgtcagcctgtagcctgctgctagcccgggctagcactgctggagcaacatcaGCAATTAGCTGGCAAAACCTACTGatttagaagaagaaaaaaacatggcgacagccCTGTTCCTTTTTAGTGTCGCAAAATGCTTTATGTTGTTTATGTAAATAGACtataaaatagacatttattgattttgcaccttataatctcatatataatatataaggtATAAACACAATGAGGGTAAAAAACACCTAGCATGTTCTCAGTCACATTCACAACGCAGCCGATTGTCTATGCGAACACATGGGCAAACAGCAAGTATGTTTCTACCCTTAAAGTCCTAAaagtacagtcatatgaaaaagtttgggcacccctat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81289 True 2803 lncRNA 0.35 2 50016514 50077207

Neighbor

gene id symbol gene type direction distance location
lonrf1 lonrf1 coding downstream 87895 49916651 ~ 49928619 (-)
LOC103027347 doc2d,LOC108413517,LOC108265638,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113 coding downstream 148446 49815224 ~ 49868068 (-)
LOC103029024 LOC108411638,LOC107603148 coding downstream 393309 49615321 ~ 49623205 (-)
acbd6 acbd6,LOC107665066,LOC107603185,LOC107758008 coding downstream 596107 49355537 ~ 49420407 (-)
LOC103035796 bsn,LOC108265177,LOC107698426 coding downstream 1045376 48939737 ~ 48971138 (-)
itgb4 itgb4,LOC108414649,LOC108415682 coding upstream 196461 50273668 ~ 50312055 (-)
sap30bp sap30bp coding upstream 237352 50314559 ~ 50335013 (-)
LOC103047029 LOC108413599 coding upstream 345856 50423063 ~ 50429144 (-)
LOC103046724 cept1a,LOC108413601,LOC107598985,LOC107665002,LOC107725317 coding upstream 359951 50437158 ~ 50446894 (-)
LOC103044996 prkcz,LOC107743854,LOC107710919 coding upstream 580404 50657611 ~ 50737252 (-)
G60325 NA non-coding downstream 15413 50000860 ~ 50001101 (-)
G60324 NA non-coding downstream 23222 49993048 ~ 49993292 (-)
G60323 NA non-coding downstream 26201 49987781 ~ 49990313 (-)
G60309 NA non-coding downstream 164719 49851378 ~ 49851795 (-)
LOC111192700 NA non-coding downstream 224958 49782633 ~ 49791556 (-)
G60339 NA non-coding upstream 90304 50167511 ~ 50193480 (-)
G60386 NA non-coding upstream 293850 50371057 ~ 50371468 (-)
G60390 LOC108413600,LOC107725316,LOC107599027,LOC107557198 non-coding upstream 311340 50388547 ~ 50420291 (-)
G60402 NA non-coding upstream 459221 50536428 ~ 50597469 (-)
G60352 NA non-coding upstream 497901 50575108 ~ 50625614 (-)
G59951 NA other downstream 711262 49304608 ~ 49305252 (-)
LOC103030200 cacna1e,LOC108265205,LOC108265123,LOC108265206 other downstream 824489 49062519 ~ 49192025 (-)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 2097100 47816355 ~ 47919414 (-)
LOC111192697 NA other downstream 2565122 47448958 ~ 47451392 (-)
LOC103040795 LOC108412055,LOC108265574,LOC105899021,LOC108412246 other downstream 2602080 47196651 ~ 47414434 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other upstream 488082 50565289 ~ 50630164 (-)
G60441 NA other upstream 750488 50827695 ~ 50832200 (-)
LOC103032656 LOC108413501 other upstream 1339013 51416220 ~ 51508580 (-)
LOC103045940 slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205 other upstream 1462291 51539498 ~ 51580634 (-)
G60627 NA other upstream 1629131 51706338 ~ 51708112 (-)

Expression


Co-expression Network