G60352


Basic Information

Item Value
gene id G60352
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 50575108 ~ 50625614 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU81321
TAGCACTTAGTTCTCCAATGGGGGTAAACTGGGTTCCACCTTTATCTGCTGAGCTGTAATCAGCAGGTTCAGCTGGAGATCAGAGTAGATTAGAGGCTAAAGGCTCACAGTGATGGTCCTCCTGAAGCTCATCAGCATTGTTAGTGTGTAAATTCACTCTTATCTCTAAAGACCCTGGTAGAGAAGTGGGTGGGTTGGGGGATCACATAATTATTCACGTTTTCTCTTTTAAAGCCCAGGAACTGCTAAACAGGAGGGTGCAAACTATCTTTACATTCGTCCGCTTTACACTGACCTACTCAGTGATGAGTCATAAGGTGGTAACAGAGAGTtgataaagggttaataaagggTTCAATTCATAAATATCTCTTTTTCTTACACCCCAACAACTCTGCAGAAAGCTAGAACTCTACAGCATTAGATTTAGTTCTAAGTTTGGGTCACAAGTTACAACACTTACCCTCCCCTGATGTGTTACTGGAAAtatgaataatgtatttataacacatttataacataGTATCATGTTAGAACAATGAATAATGCATGTATAACACATGCACAATACATTTGTAACATATCTATATGATATGACTGTAGATTAAGACTCAAATGAGAGATGTAAAGTATTTCTTATGTAGCTATAAGGTGTTATAACATACTTATAAGACCCTATAactaaatataacatatttaaaattaatgtatAACTGTTTGTGGGTTAGGagtgagtaaataaacacagtaaatgtACTAAGTAATTGGACACTGCAGTGTTTGGGTGCTGGTGGGGGTCACAAGATTAGAACTTTGGCTTTGGTGGGGGAAGCACTTCCAATTTCCTCAGGGGAAAACTGATAtgacccccaacacacacacacaacacacacacaccacacacacacacaccggggCATTTGCATGAACTGTTCCACTTGAAAAGAGCTGATGAGGCAGAGACTggagtattgtgtgtgtgtgtgtgtgtgtagaaacaGAATATGATTCAACAAAGAaatgcattcacacacacacacacacacacacacacatatcgcCACTTGCCTTAAATTTAACATATAAACAGAGAGTGACAGATGGACACACTGCCAGACAGACAGGCTAACAGACAGATGGACATGTAGACAAACTATCAGAGACAGAAGGACTGATATACAAATGGACCAAGAGACAGACAGCCATAGAAGagacagatatacagacagacacacaaacttGATAAACAGATGAACTAAAACAGATAGTTGGAGAGGCAAATGAagagacagacaaaaaaacaaacagacagatggacagacagacaaactaACATATTTACAGACTGATAGACAAATGGACACATCTTTTATTTGAATATTGGTTATTGATTAACCAATCGCGTCAAGTGCTGAATAATAAATCTTAATAAGTGAataatcagtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgcggttggACTGAAACCTGTCTGACTAATTCTTCTTACCATCCCACCCTCCCACAAACCAACTCACGCCCTCACACCCATACCACACCCCCCACACCACACCCTGCTGTCTGATACCAAGAAACGTTTAAACCCAGATTATAACATAGCACATTATGCTTAAACCCCCTATCATTACTATTATAAAGTTCTAAAGTTCTGATTCACTTTGATTGGTTCTAATTAAGTCTAATTTGTTCTAATTGGTGTTGATTGATTCTGACTTAGTCTGATGTGTTCTAATTGACTCAGAATGGAAATGGTAGGGTCAGAGTGGCTCTGATATGTTGTAATTGGCTCTAACTGGTTTTGATATGTTCATTTTGAatcagattttctttttatggTGGTCGAATTTGTTCTTATTCACCCTGTTTGTTTCTGATTGGCTATGGATCGTTTTGATTGGCTCTGCTTGGTTTCTTATTGGTTCTAATTGGCCTAATTGGTTAAAATTAGTTCTAATTCACTTTATTTTGCTCTAATTGGTTCTAGTTGATGCGGACACAGTGCAGAATAGATATTGTTCTACATTTTTTAGGCATCAGATTGGTGCTCAGTGATCATGTGACCATTAGTTAATATTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81321 True 2118 lncRNA 0.38 2 50575108 50625614

Neighbor

gene id symbol gene type direction distance location
LOC103046724 cept1a,LOC108413601,LOC107598985,LOC107665002,LOC107725317 coding downstream 128214 50437158 ~ 50446894 (-)
LOC103047029 LOC108413599 coding downstream 145964 50423063 ~ 50429144 (-)
sap30bp sap30bp coding downstream 240095 50314559 ~ 50335013 (-)
itgb4 itgb4,LOC108414649,LOC108415682 coding downstream 263053 50273668 ~ 50312055 (-)
slc5a5 slc5a5 coding downstream 505330 50055267 ~ 50069778 (-)
LOC103044996 prkcz,LOC107743854,LOC107710919 coding upstream 31997 50657611 ~ 50737252 (-)
fgd1 fgd1,LOC107552218,LOC108266043 coding upstream 591227 51216841 ~ 51272731 (-)
LOC103030869 LOC108440552,LOC108265824 coding upstream 650689 51276303 ~ 51286169 (-)
LOC111192719 NA coding upstream 820585 51446199 ~ 51460739 (-)
LOC103032967 LOC108441106 coding upstream 833822 51459436 ~ 51475848 (-)
G60390 LOC108413600,LOC107725316,LOC107599027,LOC107557198 non-coding downstream 154817 50388547 ~ 50420291 (-)
G60386 NA non-coding downstream 203640 50371057 ~ 50371468 (-)
G60339 NA non-coding downstream 381628 50167511 ~ 50193480 (-)
G60326 NA non-coding downstream 497901 50016514 ~ 50077207 (-)
G60325 NA non-coding downstream 574007 50000860 ~ 50001101 (-)
G60417 NA non-coding upstream 88389 50714003 ~ 50715742 (-)
G60422 NA non-coding upstream 113741 50739355 ~ 50742165 (-)
LOC111192702 NA non-coding upstream 121852 50747466 ~ 50795747 (-)
G60429 NA non-coding upstream 125072 50750686 ~ 50751339 (-)
G60439 NA non-coding upstream 163693 50789307 ~ 50798394 (-)
G59951 NA other downstream 1269856 49304608 ~ 49305252 (-)
LOC103030200 cacna1e,LOC108265205,LOC108265123,LOC108265206 other downstream 1383083 49062519 ~ 49192025 (-)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 2655694 47816355 ~ 47919414 (-)
LOC111192697 NA other downstream 3123716 47448958 ~ 47451392 (-)
LOC103040795 LOC108412055,LOC108265574,LOC105899021,LOC108412246 other downstream 3160674 47196651 ~ 47414434 (-)
G60441 NA other upstream 202081 50827695 ~ 50832200 (-)
LOC103032656 LOC108413501 other upstream 790606 51416220 ~ 51508580 (-)
LOC103045940 slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205 other upstream 913884 51539498 ~ 51580634 (-)
G60627 NA other upstream 1080724 51706338 ~ 51708112 (-)
LOC103028851 LOC108440537,LOC107674333,LOC108265526,LOC107584878,LOC107727418,LOC107743115 other upstream 1858815 52484429 ~ 52524184 (-)

Expression


Co-expression Network