G60417


Basic Information

Item Value
gene id G60417
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 50714003 ~ 50715742 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU81415
tccaggataaggataaaatgaattaaCAGATTCATTCCatctccatagtagtgctgctattgtggttttcataccagcagcagcaacttcaggcacaggttagttcaaattcgccCAAACAACAGATTTACTAtagtaaaaacacaataaataattaaatagtgtAGGTCAGCACATGCGCACTACCTTTAGGAAGCATTtattgatgggtagcataattcgacagaacaccattGTTGGGGACTGCCttctcagcttcctgtaattggtccgaaatttcaaaccatccagaaaagtgctttcacttcaggcgaaccggaccatggttcagacgATCCAGACCGAGATCACCTCTCTTGTTCGGACCAAAATCTtgtcctttggtccggactgTGGTTCGctgcccctttcacacctgctactttggttcggaccaaactgtaaagtccgaaagtccggaccaaacgaggcaggtgtgaaagcaccctaaatcttaaaatgtataaacataaataaaaggaatcagAGGAGGAGGCAGAAAAAAATTGGAATTTGGAAAGGAGGAAAAACTCATCAgtgtaaagcaggggtgtccaaactttttttgttggggcccagaaggagaaatatatttcaagtcacgggccacagactctgtaataaaacaaataatgaaatataccactttaaataataccttTTTTCCTGatcatttcatttacacaccattttacttgacttactatctttatctttgacagtgttgtgtaaactaagatttttcaaattgatgtttaatttcatgatgtttcTTAACATGAAACTCCTTAATTACTaaaacttttagactctttggcccgtttttctgcgctagaaatgcgcaccctctccgcttttagactttttgcccatttttctgtgctagaaatgcgcaccctctccgcttttagactctttggcccgtttttctgcgctagaaatgcgcactctctccgcttttagactcttttgcccatttttctgcgctagaaatgcgcactctctccgcttttagactctttggcccgtttttctgcgctagaaatgcgcaccctctccgactctttggcccgtttctgacacctagccttcaaactttgaatctcacattataaaaacctgcttaacagcgggccaactttcattctatttctaaaatacctcgcaggccgctccaaaaaaggaaacgggccgcaaatggcccgcgggccgtagtttggacacccctggtgtaaaGTAAAGAGAGCTaagtactctactgtactcagtcactaaactgcagcgTGGAACTGAAGAAAACTAACAAGActgaaaatacagtatacagtgtaACTAACACATGCTGTCATGCTGTCCAGATTAAAAGCTGTGGTTTGACCTCAGGCTGACCTGCCTCATACACTGATCTATGGGCACTGTAGGAACCAGGAGTCTGCTCTGGAGTGTGTTGACTGTGGGAGTGATGGGATCAGACAGCAGGAGGTTAATCAGACCTGTGTTCTGCTCCAGGGTTCTAGTGGTTCCTCAGCAAGAGTTCTGTGGAGCTTCTGAACAGGAGAACTGTATGTGGATGATATACTGATGTTCCTCTCTGCAGCTACAGCAACAGTGGACACTTTAAAATGAGTTCTGCAGGGGGCTCTATAAag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81415 True 1688 lncRNA 0.43 2 50714003 50715742

Neighbor

gene id symbol gene type direction distance location
LOC103046724 cept1a,LOC108413601,LOC107598985,LOC107665002,LOC107725317 coding downstream 267109 50437158 ~ 50446894 (-)
LOC103047029 LOC108413599 coding downstream 284859 50423063 ~ 50429144 (-)
sap30bp sap30bp coding downstream 378990 50314559 ~ 50335013 (-)
itgb4 itgb4,LOC108414649,LOC108415682 coding downstream 401948 50273668 ~ 50312055 (-)
slc5a5 slc5a5 coding downstream 644225 50055267 ~ 50069778 (-)
fgd1 fgd1,LOC107552218,LOC108266043 coding upstream 501099 51216841 ~ 51272731 (-)
LOC103030869 LOC108440552,LOC108265824 coding upstream 560561 51276303 ~ 51286169 (-)
LOC111192719 NA coding upstream 730457 51446199 ~ 51460739 (-)
LOC103032967 LOC108441106 coding upstream 743694 51459436 ~ 51475848 (-)
abtb1 abtb1,LOC107674366,LOC107696919 coding upstream 886570 51602312 ~ 51616374 (-)
G60352 NA non-coding downstream 88389 50575108 ~ 50625614 (-)
G60354 NA non-coding downstream 99786 50608284 ~ 50614217 (-)
G60355 NA non-coding downstream 109064 50603681 ~ 50604939 (-)
G60350 NA non-coding downstream 113363 50598816 ~ 50600640 (-)
G60402 NA non-coding downstream 116534 50536428 ~ 50597469 (-)
G60422 NA non-coding upstream 23613 50739355 ~ 50742165 (-)
LOC111192702 NA non-coding upstream 31724 50747466 ~ 50795747 (-)
G60429 NA non-coding upstream 34944 50750686 ~ 50751339 (-)
G60439 NA non-coding upstream 73565 50789307 ~ 50798394 (-)
G60440 NA non-coding upstream 85251 50800993 ~ 50801507 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other downstream 83839 50565289 ~ 50630164 (-)
G59951 NA other downstream 1408751 49304608 ~ 49305252 (-)
LOC103030200 cacna1e,LOC108265205,LOC108265123,LOC108265206 other downstream 1521978 49062519 ~ 49192025 (-)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 2794589 47816355 ~ 47919414 (-)
LOC111192697 NA other downstream 3262611 47448958 ~ 47451392 (-)
G60441 NA other upstream 111953 50827695 ~ 50832200 (-)
LOC103032656 LOC108413501 other upstream 700478 51416220 ~ 51508580 (-)
LOC103045940 slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205 other upstream 823756 51539498 ~ 51580634 (-)
G60627 NA other upstream 990596 51706338 ~ 51708112 (-)
LOC103028851 LOC108440537,LOC107674333,LOC108265526,LOC107584878,LOC107727418,LOC107743115 other upstream 1768687 52484429 ~ 52524184 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G103752 NA non-coding NC_053121.1 CM020918.1 6713953 ~ 6714209 (+)