G60457


Basic Information

Item Value
gene id G60457
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 50866155 ~ 50872466 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU81474
caagagtgtgtaaagcagtaatcagagcaaaggggggctattttgaagaaactagaatataaaacatgttttcagttatttcacctacCTTATTTCAAGTACATAAAAcaccacatgtgttcattcatagttttgatgccttcagtgagaatctacaatgtaaatagtcatgaaaaaaaagaaaatgcattgaaaaagagaaggtgtgtcctgtactgtacatttttctATGACATAACAGCTGAGAGAAAAcgtagtttgtttgtttttttacggttaaacacattaaaatataacCACCTTCTGAAAGCAGCTTCTAGCTCTGAAGAACCTTTTCTGGCACCTTTACTTCCCCCTCAGAGTTTAGACGCCTCTACTGCGTTTGTGCTCAGATACTAAAGAGATAAATCCCGGTTTTATGGAGCTTAACAGCTGAATTTTGTATACCTGAATTAAATTTACCTaatgctttttgtgttttgaacTTGAGATGGTGGGAAGAGGGGAAATTTAGGCCAAAGGGGAAATATCAGGGATTCATAGGAAAAGTAAAAACaccacacgcgcacacacacacacacacatgctctttcaaaacacacacacacacacccacacacactcgtcCTCAGTCGCTGCGAGAGAGGCAGGGAGGCGCCGGGTTAGGGACCGGCCAGACAGGTGCGGGTCGACCCACCTGATCCCACCATGAAGAAATTGAGCCGTTTTTTTAGAACGCTATTATTCAGGTGCAGCCATTGTTCGGAAAAAACTTCGTAGGTCAAACAAATGttgtcttgtttttcttcttcttccgtCGTCGTCGTCGTTAACATATAGTCGCTGGTTCCCTCAGACGTTCTCAGTCCTCATAACTTCTGGATCTTCTCTGCCACCACGATGGGGTTCTCCTTGCGGATGCGGGCAGCTGCCGCCCCTCTGTAGTCGTAGGGGCAGTCGTGTTTGTCCGAGTAGCGGTGGATGGCGCAGAACAGGTTGCCACAGCGGCAGT
>TU81476
caagagtgtgtaaagcagtaatcagagcaaaggggggctattttgaagaaactagaatataaaacatgttttcagttatttcacctacCTTATTTCAAGTACATAAAAcaccacatgtgttcattcatagttttgatgccttcagtgagaatctacaatgtaaatagtcatgaaaaaaaagaaaatgcattgaaaaagagaaggtgtgtcctgtactgtacatttttctATGACATAACAGCTGAGAGAAAAcgtagtttttttttttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81474 True 1012 lncRNA 0.44 2 50869739 50872466
TU81476 False 279 lncRNA 0.31 2 50866155 50872466

Neighbor

gene id symbol gene type direction distance location
LOC103044996 prkcz,LOC107743854,LOC107710919 coding downstream 128903 50657611 ~ 50737252 (-)
LOC103046724 cept1a,LOC108413601,LOC107598985,LOC107665002,LOC107725317 coding downstream 419261 50437158 ~ 50446894 (-)
LOC103047029 LOC108413599 coding downstream 437011 50423063 ~ 50429144 (-)
sap30bp sap30bp coding downstream 531142 50314559 ~ 50335013 (-)
itgb4 itgb4,LOC108414649,LOC108415682 coding downstream 554100 50273668 ~ 50312055 (-)
fgd1 fgd1,LOC107552218,LOC108266043 coding upstream 344375 51216841 ~ 51272731 (-)
LOC103030869 LOC108440552,LOC108265824 coding upstream 403837 51276303 ~ 51286169 (-)
LOC111192719 NA coding upstream 573733 51446199 ~ 51460739 (-)
LOC103032967 LOC108441106 coding upstream 586970 51459436 ~ 51475848 (-)
abtb1 abtb1,LOC107674366,LOC107696919 coding upstream 729846 51602312 ~ 51616374 (-)
G60442 NA non-coding downstream 28836 50835080 ~ 50837319 (-)
G60440 NA non-coding downstream 64648 50800993 ~ 50801507 (-)
G60439 NA non-coding downstream 67761 50789307 ~ 50798394 (-)
LOC111192702 NA non-coding downstream 70408 50747466 ~ 50795747 (-)
G60429 NA non-coding downstream 114816 50750686 ~ 50751339 (-)
G60444 NA non-coding upstream 19686 50892152 ~ 50897009 (-)
G60445 NA non-coding upstream 24720 50897186 ~ 50899078 (-)
G60464 NA non-coding upstream 120022 50992488 ~ 51000932 (-)
G60544 NA non-coding upstream 341062 51213528 ~ 51252299 (-)
G60552 mecp2 non-coding upstream 426047 51298513 ~ 51329725 (-)
G60441 NA other downstream 33955 50827695 ~ 50832200 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other downstream 235991 50565289 ~ 50630164 (-)
G59951 NA other downstream 1560903 49304608 ~ 49305252 (-)
LOC103030200 cacna1e,LOC108265205,LOC108265123,LOC108265206 other downstream 1674130 49062519 ~ 49192025 (-)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 2946741 47816355 ~ 47919414 (-)
LOC103032656 LOC108413501 other upstream 543754 51416220 ~ 51508580 (-)
LOC103045940 slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205 other upstream 667032 51539498 ~ 51580634 (-)
G60627 NA other upstream 833872 51706338 ~ 51708112 (-)
LOC103028851 LOC108440537,LOC107674333,LOC108265526,LOC107584878,LOC107727418,LOC107743115 other upstream 1611963 52484429 ~ 52524184 (-)

Expression


Co-expression Network