RNA id: XM_022670859.1


Basic Information

Item Value
RNA id XM_022670859.1
length 4107
RNA type mRNA
GC content 0.51
exon number 16
gene id fgd1
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51216841 ~ 51272731 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAAGGGAGCCaggaagaaaaagaggaggaggagaaaaggcacagagagaaaaagagggagaaggGGGGTTAGGTTTATCGTCTTTTAGACTCTCCACACATCTGACAACCGTACTGTCGAGGGTTTTTACTTCAGTTCACACGTATAACTTCATCTACAGTGGATCTGTAACCGGTGTAAACTGAGGGAAAATGCTGCAGCTGGATTATTTAAGGAGACTCTTCAGCTTCTGAATGCTTAAAGCGGTAAAACCGAGGAATTGAGCGCAGAAACGAAGCGgttggaggatttttttttgtgtgtaagaAGCTGAGTGAGCACATTTTGATGAGCTTTCTGGCTTTCTAAGGGAAACAGACTGAACGGCGACGGGAATGGCCAAAGCTGACTTCAACTTTTACACGTTTTTGAACAAATACAGCGCGTATATTGAATGAACAGTTAATTGGGATACGCGACAAGACGATggattacgtttttttttgtagtttctgTTTAATTCTGGGTAATTTCACGACTTTCTCGAATTCTGCTGAGATGGCAGTGGTCTGCTAACTAAATAGGCTTGTTTAAATAGCTGTAGTACTTTTTCCACTCATTGtcttgttttggttttttttcttcctcctttttgGGTTAATGCTACTTTATAATAGCGTTTTTACAGTACCACAGTTAGTTAACTAACCTAAAGATGAGAGAAAATAACGTTAGCTATAGATACGAAACAATAGAAACGCAACTTTAAGAagcttttattgttttgttttgttttcgttTCGTAGCACCTGGAATAGAACATAAAATAGAGACGTGTTGTTGTGTATGTACTTTTAAACAAAGGATTAAGTTAGCGTATAGCGTGTAGTCGTTTTACTTTAAGCTAAATAACTAACTAGCTTGTTAACAAAGAAAGGTGGTATAAATTATTgaagtgaaaaaagaaaaagaatatgATAGAGTAAGACATATAGCTAATTTAAGTCAATGGTAACGTTACTAAAATGTATAGATAACAAACatactctcttttttttaataacaacaAAACCTAAGCCAACAACAGCACCGTTATGCAGGCTTCACTTTACTTTTAACGTTAAcccactcatcatttttaaactaGGTAGCTACTAAATGACCCAGAATTAAATAAGCTGCTCTTTGATGGAGTTTTCCAGCACTCGAAGGCACTTGGATTTGATTTTTGCTCTGGGCAGCAGCCTGGGAGATAATAATCCCCCTTCCAGCTCGCTACAACCCACCGTGTCCCGCCTCCAGGCTGAGGGCGAGCAGGCATGCAGCTGAACCGGCCGAGGAGCGCCCTTGTCGGCTACGCGGAGAGCCACGCGTCCTTCTCCAGCCAGTTCAAAACCATGCGCTTCTCCTACCACATCAGCGGGGGGCTGCCGAGCCCTCAGCCGGCTGTACGCCGGAGAGGCCCGTCCGCATCCAGTCCTCGGCTCCTGACTAAGAGTCTATCCCTGGAGCCGGGCCCCTGCCCAGGAGCCCACGACACCCCTCAGCGCCTTTGCTCGGACCCTGGACCCCTTGGGCCCGAGCTCTGCAATGGCACAAGTGAAAACGGGCCTCAGGATCCACCCCCACCTCCCCCCAAAACACGCCCACCTTTACCTGGCCCCAAACCACAAGTGCCCCCGAAGCCACCGCATCTACAACAGCAGAGTGCTCGTCGACCTCGGCCTCCAGATAAGCCTCTACCTCCGCCCCCATCCCGCCCACTCCCAGCCGATCCCCGCCAACCACGGCCCACACTGGCACAAACGGAGGGAAGCTCCTCCCCTACGTGCGTTCTGTCACTCATCGAGCGATTtgagagGGAGCAAATCATTGTGGTGCCTGACATCACAGGGGGAGTGATGTGCACCCCTCGGGTTCCTGAGCCACAGTCTGCTGTGGGGGCTTCCACCCCACCATCAGAGACCATACTGCCCTGTACCTCCATTCCAGGTCCTTTAGAGGCTCCTCTGGCCAAGGAAGAGCAGgaacaggagcaggaaggagaagaagaggaggaggaggaaggggaGATGAAAGTGCGGGagcaagaagaagaggaggatgagggCGAATTAGGGGCCTCCTGTTCTGAAAAGCGTCTGTCCATGGAGTCTGGCTACAGCGCATCCGACAAACTGCTGGACGCCATAGAAATGAGGGacctcaaccaatcagagaTCCCGTCAGAACGGTTGTCCCTCCCCCCACAACAGACTGATGGCAAACTGGCCAACAGGGACAGCGGCATTGACAGCATCAGCTCTCCCTCTCACAGCGAGGAACTGTGCTTTGCTGGAGATGAGGACCGCATCGGGCACGAGAGAGAGATGTGTCCATGCAGTCCCACGGCCACTCTTCCTCGGCTCTCGTCCTCATCCTCGTGTGGCTGTGTGGAAGCTGCCCTGGGTGAGGGAGCTGCTGCAGCAGAGGGTGGGAGGGACTCAGAGGGGGACAGTGATTTGGAAGAGGGAAGTGGAGATGAGAGTGAGATGAACCCCATGGCCCTGCAGCCTCAGGCAAAAGCAGAGAGGCAGGACTCTGTTGAGCTGTCAGTCCAGCAGCGAGTGTTCAACATCGCCAACGAGCTCCTCCAGACGGAGAAAGCCTACGTGTCCAGGCTTCACCTCCTGGACCAGGTGTTCTGTGGGAGGCTGATGGAGGAGGCGCGAGCCCGGGGCTCCTTCCCCTGTGAGGTGGTTATGGGTATCTTCTCCAACATCTGCTCCATTTACTGCTTCCACCAGCAGTTCCTGCTGCCAGCACTGGAGAAACGTATGGAAGAGTGGGATGCGAACCCCAGGATCGGGGACATCCTGCAGAAGCTGGCTCCCTTCCTGAAGATGTATGGCGAGTACGTGAAGAACTTTGACACGGCCATGGAGCTGGTGAACACCTGGATGGAGCGATCCTCACAGTTTAAAGCCATCATCCATGACATTCAGAAAGAGGAGATGTGTGGTAACCTCACCCTGCAGCACCACATGTTGGAGCCCGTGCAGCGGATCCCTCGCTATGAGCTACTTCTGAAGGACTACCTGCACCGGTTGCCTGAGGACGCAGATGACTTTAAAGATGcacagaAATCTTTGGAGTTGATTGCTACAGCTGCTGAGCACTCCAACGCAGCCATCAGGAAGATGGAGCGCATGAGAAAGTTGTTGAAGGTGTATGAACTGCTTGGGGGAGAAGAGGACATTGTTAACCCGACTAACGAGCTCATTAAGGAGGGACACATCCTCAAACTGTCAGCCAAGAACGGAACTTCGCAGGACAGATACCTCATACTGTTCAATGACAGGTTACTGTACTGTGTCCCCAAGCTGAGACTGATTGGACAGAAGTTTGGAGTGCGTGCAAGGATTGATGTAGATGGAATGGAGTTGAAGGAGACGAGCAGTATAAATGTGCCACGGACATTTCTGGTGTCAGGAAAACAGCGTTCTCTTGAACTGCAGGCCAGaaccgaggaagaaaagaaagactgGATTCAGgcgaTCCAGGCCACTATTCAGAGACACGAGCAGAGTGTTGAGACGTTCCGGATGTTGAACTGCTCGGTGCGTGAGGAGGACTGCACACCCCCCAACTCACCGAACTGCACAGAGCTGGGAAAGCGTGCCCCGACTCCTATACGGGAAAAAGAGGTGACGCTCTGCATGAAGTGCCAGGAGCCATTCAACTCCATCACTAAGAGACGGCACCACTGCAAAGCGTGTGGCCACGTGGTGTGTGGGAAGTGCTCGGAGTTCCGCGCCCGGTTGTTGTACGATAACAATCGGGCGAACCGTGTGTGTATAGACTGCTACACGATGCTGGTGGGAGTCCCGCCTTCTCCAGCCAGCTTGACCAATAGCAGTCAAAGAAGACGTTCCATTTTAGAGAAACAGGCTTCTGTTGCGGCGGAGAACAGTGTGCTCTGCAGCTTTTTGCACCACATGGAAAAGGGCAGCGGGCGTGGCTGGCAGAAAGCCTGGTTCGTCATCCCTGAAAATGAACCACTGGTGCTCTACATTTATGGTGCTCCACAGGTGAGATATCAGCTGATTTCTTCGTTAATTAAAAGGAAATAATTATGTCCCTCCTGT

Function

GO: NA

KEGG:

id description
K05720 FGD1; FYVE, RhoGEF and PH domain containing 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81483 lncRNA downstream 215909 50992488 ~ 51000932 (-) True G60464
TU81460 lncRNA downstream 317763 50897186 ~ 50899078 (-) True G60445
TU81459 lncRNA downstream 319832 50892152 ~ 50897009 (-) True G60444
TU81476 lncRNA downstream 344375 50866155 ~ 50872466 (-) False G60457
TU81474 lncRNA downstream 344375 50869739 ~ 50872466 (-) True G60457
TU81632 lncRNA upstream 25782 51298513 ~ 51329725 (-) True G60552
TU81639 lncRNA upstream 33957 51306688 ~ 51378143 (-) True G60554
XR_002650104.1 lncRNA upstream 37069 51309800 ~ 51318914 (-) True LOC111192703
TU81653 lncRNA upstream 69965 51342696 ~ 51409262 (-) True G60566
TU81641 lncRNA upstream 74544 51347275 ~ 51348063 (-) True G60556
XM_007236938.3 mRNA downstream 479589 50657611 ~ 50737252 (-) False LOC103044996
XM_007236937.3 mRNA downstream 479589 50657611 ~ 50737252 (-) True LOC103044996
XM_007236939.3 mRNA downstream 508110 50657611 ~ 50708731 (-) False LOC103044996
XM_007236943.3 mRNA downstream 586677 50565289 ~ 50630164 (-) False LOC103046211
XM_007236942.3 mRNA downstream 586677 50565289 ~ 50630164 (-) True LOC103046211
XM_007245836.3 mRNA upstream 3572 51276303 ~ 51286169 (-) True LOC103030869
XM_022670868.1 mRNA upstream 143489 51416220 ~ 51444657 (-) False LOC103032656
XM_022670867.1 mRNA upstream 143500 51416231 ~ 51444657 (-) False LOC103032656
XM_007245842.3 mRNA upstream 151992 51424723 ~ 51444657 (-) False LOC103032656
XM_022670942.1 mRNA upstream 173468 51446199 ~ 51460739 (-) True LOC111192719
TU81451 other downstream 384641 50827695 ~ 50832200 (-) True G60441
TU80777 other downstream 1911589 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 2132908 49062621 ~ 49083933 (-) False LOC103030200
TU80460 other downstream 3297460 47816355 ~ 47919381 (-) False selenok
TU80461 other downstream 3297460 47843007 ~ 47919381 (-) False selenok
TU81746 other upstream 433607 51706338 ~ 51708112 (-) True G60627

Expression Profile