RNA id: TU81460


Basic Information

Item Value
RNA id TU81460
length 1311
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G60445
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 50897186 ~ 50899078 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctggaaaagaaaaaaaggacatttcttaaaactaaaacaacaactttataataataattataataataataataaacaaacaatgcaTAAGTGGACACAATAACACACCACCCATAACGTCTTCTAGTCCCtgacccgaaaaaaaaaaaaaaaaaaaaatctaaaagaacAGAGTCCATTTACACGTTAGCAAATCCGGTTATACAGTACATCCATCTGAGCGATTAGAAAAGACATCTGCAGAACCTGGGTTCTTTAAACACAGAGGAAATTCCAGAATCAGGGTTCTGGTGGTGGGCTGGAGCTTTTAGAACAACTCCAGTATATCCagtctctccacacacacacacacacacaccaataatCCCCTCAACAGCTTGAACAACAGTGAGCTTTGTTTTTAGCGATTAGCCGTGCTGTAGCTGCAGTAACACCCAACACCTGCTGTCTTCAGGCTGACCCGAGATTAAAACTGGCCCGAGAAGAACGTCCACACTTCCCTCACGAACCAACAATtcaactacacacactaacactgctaaccatcAAGCTACAGAGGCTAATTTACCAGCTAGCTAACTGACTAGCCAGGCTATAGGCTAAAGTCTGGGTAAATCTAGCCTGATGTGGACGACCTCAGATCCCTTATCAACAAATAAGCCTAAAAATCTATTTAAGATGCTATGTTAAAGTTGCTAATCATGATGGAAGGTAGCGTCAGCATAACAGCTTCAACATAATGCTAACCGAAGATTATTTGCTTTCATTTACTGTCAGCATTATATTGAGCGAACCTAAAAATGCTTGTGAATAAACGCAATATTTATAATGCTAACTGAGTTGGCAGCTACTGACCATTCAGTCTTTACAAAAAATGTGGAACCATGGTAATAATGAAGGGAAGATATTAGCCAACCAATTATTATAGCATTAGCAAATTCTGTTCATTTTGAACAGCTTGACCAAAAATGCTAACACTGcttaaaatgaatcaaaattAGCAGCTGATCACAAATTCtgtcaatttattattattaaacagtagATTCACATTTGCTAGGCTTTttagtatttatattataaataataaagcccTGGGTCATCACTAAAAGCTGTGTAGAGAGGATGTTAGCAACGTCTCTTTAGCTGCTTATTCAAAAACAGTCCACGCCGAAATGCTCCTTATAAGTTTTCTATCAGTTAGCTGTAtccttaaagatagatagatataagtggttttgtgacatcactagaaaaaaaaattcacaatcAAAACAATCTGTTTAGTGtagataattattaatatatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81459 lncRNA downstream 177 50892152 ~ 50897009 (-) True G60444
TU81476 lncRNA downstream 24720 50866155 ~ 50872466 (-) False G60457
TU81474 lncRNA downstream 24720 50869739 ~ 50872466 (-) True G60457
TU81452 lncRNA downstream 59867 50835080 ~ 50837319 (-) False G60442
TU81483 lncRNA upstream 93410 50992488 ~ 51000932 (-) True G60464
TU81623 lncRNA upstream 314450 51213528 ~ 51252299 (-) True G60544
TU81632 lncRNA upstream 399435 51298513 ~ 51329725 (-) True G60552
TU81639 lncRNA upstream 407610 51306688 ~ 51378143 (-) True G60554
XR_002650104.1 lncRNA upstream 410722 51309800 ~ 51318914 (-) True LOC111192703
XM_007236938.3 mRNA downstream 159934 50657611 ~ 50737252 (-) False LOC103044996
XM_007236937.3 mRNA downstream 159934 50657611 ~ 50737252 (-) True LOC103044996
XM_007236939.3 mRNA downstream 188455 50657611 ~ 50708731 (-) False LOC103044996
XM_007236943.3 mRNA downstream 267022 50565289 ~ 50630164 (-) False LOC103046211
XM_007236942.3 mRNA downstream 267022 50565289 ~ 50630164 (-) True LOC103046211
XM_022670859.1 mRNA upstream 317763 51216841 ~ 51272731 (-) True fgd1
XM_022670860.1 mRNA upstream 317763 51216841 ~ 51243712 (-) False fgd1
XM_007245836.3 mRNA upstream 377225 51276303 ~ 51286169 (-) True LOC103030869
XM_022670868.1 mRNA upstream 517142 51416220 ~ 51444657 (-) False LOC103032656
XM_022670867.1 mRNA upstream 517153 51416231 ~ 51444657 (-) False LOC103032656
TU81451 other downstream 64986 50827695 ~ 50832200 (-) True G60441
TU80777 other downstream 1591934 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 1813253 49062621 ~ 49083933 (-) False LOC103030200
TU80460 other downstream 2977805 47816355 ~ 47919381 (-) False selenok
TU81746 other upstream 807260 51706338 ~ 51708112 (-) True G60627

Expression Profile