G60554


Basic Information

Item Value
gene id G60554
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51306688 ~ 51378143 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU81639
AGTTAtgcatAACTTCTCAAAAAGTAAGGGTCCCGATCTAGGATCAGATTTTAATTTTCAAATCATTTCAAAGACGTTGAAGAACTTTATCCTGGATCAGCACTCTCACTTGGTATACATCTGCACACCAAGTTCAAATCACCAGCCAACTCGAGTGAGTAGGACCCCCTTAAAAAAGTGGAAACGTCTTAAACATTCCCCCAATTAAGACAAGAATCCCAGTTTTGCTTTTTTACCTCTACCAACTCACAAACAagcatagaaaaaaaatccactgaaagtaaattttacattaactATGGACTAGTGAAAGGTTAACAGGATAAGAAAAATTAACCAAACAACAGGAACATAAGCGTTACTCCTTTAAAATGTCCAACAGTATACAAGTCGGGAGGAAACGAACAAAAAcgcaaaaactattttattcaaTATTCTCAAGCTTGGGTGTGGGGTGGGTCGTCTGTCCCCAGAACGAGTACAAAAAGTTCACTTTATATTCCAATTTCTGAACCACCGTTTGAAATACTTAACATGGGATGTAAAAAATACCGTGGCACTAAGACAAGCTGCCACACAATCCCACAAGCACAACTCATCGACTATAGGAATGAGCAGGAAACAAGTTTTAAAACCGCGCggatgcacacaaacacagtgaggGGGGGAGaaaaagatcattttaaaaaaagaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcaggattctattcagtaaaaaaacagaatgccTGCATTCATAGCTCTCTATGGCATGCATTTATATCGCAAATCACAACAACACACTAAAACATCATCCtacttaggcctgtcacgataacctGATAACATGTTTTGTCTGGGCGATATATTCTGTCTTAGGAATTCTGTCTCATGTTAACTGTAACCATTTCATGCAGCTGATATAATAATGATCa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81639 True 951 lncRNA 0.36 3 51306688 51378143

Neighbor

gene id symbol gene type direction distance location
LOC103030869 LOC108440552,LOC108265824 coding downstream 20519 51276303 ~ 51286169 (-)
fgd1 fgd1,LOC107552218,LOC108266043 coding downstream 33957 51216841 ~ 51272731 (-)
LOC103044996 prkcz,LOC107743854,LOC107710919 coding downstream 569436 50657611 ~ 50737252 (-)
LOC103046724 cept1a,LOC108413601,LOC107598985,LOC107665002,LOC107725317 coding downstream 859794 50437158 ~ 50446894 (-)
LOC103047029 LOC108413599 coding downstream 877544 50423063 ~ 50429144 (-)
LOC111192719 NA coding upstream 68056 51446199 ~ 51460739 (-)
LOC103032967 LOC108441106 coding upstream 81293 51459436 ~ 51475848 (-)
abtb1 abtb1,LOC107674366,LOC107696919 coding upstream 224169 51602312 ~ 51616374 (-)
LOC103034245 LOC103034245,LOC105899047,LOC108441101,LOC101487991,LOC107653429 coding upstream 279258 51657401 ~ 51662840 (-)
slc6a8 slc6a8,LOC103036862,LOC108441094,LOC107734513,LOC105006658 coding upstream 525081 51903224 ~ 51973896 (-)
G60544 NA non-coding downstream 54389 51213528 ~ 51252299 (-)
G60464 NA non-coding downstream 305756 50992488 ~ 51000932 (-)
G60445 NA non-coding downstream 407610 50897186 ~ 50899078 (-)
G60444 NA non-coding downstream 409679 50892152 ~ 50897009 (-)
G60457 NA non-coding downstream 434222 50866155 ~ 50872466 (-)
G60584 lhfpl4b,LOC103032126,LOC108440531,LOC107584928,LOC107727430,LOC107674308,LOC105898894 non-coding upstream 32461 51410604 ~ 51413147 (-)
G60594 NA non-coding upstream 156335 51534478 ~ 51536312 (-)
G60619 NA non-coding upstream 267078 51645221 ~ 51647695 (-)
G60628 NA non-coding upstream 334474 51712617 ~ 51713092 (-)
G60629 NA non-coding upstream 335044 51713187 ~ 51714166 (-)
G60441 NA other downstream 474488 50827695 ~ 50832200 (-)
LOC103046211 ski,skia,LOC108410624,LOC107599811,LOC107657901,LOC107699765,LOC107548407 other downstream 676524 50565289 ~ 50630164 (-)
G59951 NA other downstream 2001436 49304608 ~ 49305252 (-)
LOC103030200 cacna1e,LOC108265205,LOC108265123,LOC108265206 other downstream 2114663 49062519 ~ 49192025 (-)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 3387274 47816355 ~ 47919414 (-)
LOC103032656 LOC108413501 other upstream 38077 51416220 ~ 51508580 (-)
LOC103045940 slc6a6a,LOC108441104,LOC108264963,LOC107714566,LOC107696920,LOC107552205 other upstream 161355 51539498 ~ 51580634 (-)
G60627 NA other upstream 328195 51706338 ~ 51708112 (-)
LOC103028851 LOC108440537,LOC107674333,LOC108265526,LOC107584878,LOC107727418,LOC107743115 other upstream 1106286 52484429 ~ 52524184 (-)

Expression


Co-expression Network