RNA id: XM_022670942.1


Basic Information

Item Value
RNA id XM_022670942.1
length 1962
RNA type mRNA
GC content 0.41
exon number 17
gene id LOC111192719
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51446199 ~ 51460739 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgtctgcagcacaaacCGAGTCTCTGCGGTTTCCTCTGAGCGAACTGCGATGCTACTCGGCATGCTACTCcgacatgtgtcggaggaggcatCTTCTCTGCCGTACTGGAGGAATCCTTATTACTTCAGAACAACTCAACAAACGTTTAGATGGAGAAACTGGTGGGAAACTACTAAACCACCTTACAGATTCACTCCAACTTCTCTGCCGTACTGGAGGAATCCTTATTACTTCAGACCAACTCCTCTGCCGTACTGGAGGAATCCTTATTACTTCAGAACAACTCAACAAACGTTTAGATGGAGAAACTGGTGGGAAACTACTAAACCACCTTACAGATTCACTCCAACTCCTCTGCCGTACTGGAGGAATCCTTATTACTTCAGAACAACTCAACAACCGTTTCGATGGAGAAACTGGTGGGAAACTACTCCTCTGCCGTACTGGAGGAATCCTTATTACTTCAGAACAACTCAACAAACGTTTAGATGGAGAAACTGGTGGGAAACTACTAAACCACCTTACAGATTCACTCCAACTCAACAACCGTTTCGATGGAGAAACTGATGTACCTGACCCCATTGTGGAGGTGTATCAGCAGGTGGGGAACAGCGAGAGCCTCATCGTCGTCTGTCAGTTTAAAATGAAGACCAGCGTGAGCTCTTTCCATCTGTCTGTCACAAATGGTGACGGTAAACGCACGCTGAACAACCCAGCATGCATTGCAGAGACCACGTGTGTGTTCAACATCACCACCAACTCACCTGTCTCCTTCACCTGTGTGCATGTAGTCAGCGCACGCACAGATATCCAGACTCTGCTCAGTGACGTCTTCATTTACCAGCCTTACAAACAGGTTTCTCCTGCCTACATTGGATTTGCTTCATTCATTGGAGTTGGTCTCGTCATCTTGGTGATCATGCTGGTGGTGACCACACTTAAAACCAGACGTAAAGTTTCACGGCAGGAGGTGAAGGAGAATGTGTATGAACACACAGAAATCGTTTAATCCTCCCTGAAAAGGTCGAGACTGGATTAAAAAGAAGCGGAGAaggaataatctaaaataattaaaagttttttttttgtttttgtgccgCCCAATTAACAACTACTGTATTAAGCAATTTATTTATGCatgtttttctaaaataattacTGCTAAAGTAACAATAGATTCTAAATAACAGCATTCATGTAAAACGGACACTGCAgtctgattttaaaacattggAGAGATTGGTAGTCTGCCCTGCTCCCTCTTCTCCAGAAATGAAGATCATATTGTTTGCCAAGTTGAGGACACTGAaccaacaaaaaacatgcatttatacatttacagataaattaagtaaatatagAGTAAAACATTTGGTTTCTGTCGTATGTTTCAGCCACATTATTGCTCCTAACCTGATGCTGCTAGCAAGCACTAGTCTAGATCACTTTATCTAACTCAAATAATCACTGTCTTAAAACCCATTGATGATTACGCATGCAATACTGTAATGTTGGAATGACTCAAAATGCCCTTCCATACTAGTGGATGTGATGCATTACCTAAATAAAGTTAGTTAATCTTCAGCTAACCTTTGCTGAAGtgcagtgattacctgttcatcaGGAAATATACAGCTCGGCatccgtcttgtagtccttctgggctcttaACTGTCTCCATTTATTAAATGCCTTACCAATATTTACTCACATTTTACTCCAACTCTGCTCATAAAGTTTTTTAGATGCATGCTGATGCTGCAATACTTTCTTATGTAACCTTTCCTTTGGTTATTAGAGTGTGTTGCAGAATACTAAACTGGACTGGTTCTGTTTTAACTGTCTGAATTAAACAGCATTAACCTGTTCACACTCTGCTATACTGTTGTCTGATTCTGTTgtttgcagcactgtgtgtaatgtgtatgaATGATCCTCAGttttgcatatacagctctag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81661 lncRNA downstream 3347 51364322 ~ 51442852 (-) True G60571
TU81675 lncRNA downstream 33052 51410604 ~ 51413147 (-) True G60584
TU81653 lncRNA downstream 36937 51342696 ~ 51409262 (-) True G60566
TU81659 lncRNA downstream 86032 51358476 ~ 51360167 (-) True G60570
TU81641 lncRNA downstream 98136 51347275 ~ 51348063 (-) True G60556
TU81707 lncRNA upstream 73739 51534478 ~ 51536312 (-) False G60594
TU81708 lncRNA upstream 73739 51534478 ~ 51536312 (-) True G60594
TU81703 lncRNA upstream 78759 51539498 ~ 51580634 (-) True LOC103045940
TU81735 lncRNA upstream 184482 51645221 ~ 51647695 (-) True G60619
TU81738 lncRNA upstream 186109 51646848 ~ 51647695 (-) False G60619
XM_022670868.1 mRNA downstream 1542 51416220 ~ 51444657 (-) False LOC103032656
XM_022670867.1 mRNA downstream 1542 51416231 ~ 51444657 (-) False LOC103032656
XM_007245842.3 mRNA downstream 1542 51424723 ~ 51444657 (-) False LOC103032656
XM_007245836.3 mRNA downstream 160030 51276303 ~ 51286169 (-) True LOC103030869
XM_022670859.1 mRNA downstream 173468 51216841 ~ 51272731 (-) True fgd1
XM_022670869.1 mRNA upstream 354 51461093 ~ 51471858 (-) False LOC103032967
XM_022670872.1 mRNA upstream 82367 51543106 ~ 51577160 (-) False LOC103045940
XM_022670871.1 mRNA upstream 82367 51543106 ~ 51577160 (-) False LOC103045940
XM_022670873.1 mRNA upstream 141573 51602312 ~ 51616374 (-) True abtb1
XM_007245847.3 mRNA upstream 196662 51657401 ~ 51662840 (-) True LOC103034245
TU81451 other downstream 613999 50827695 ~ 50832200 (-) True G60441
TU80777 other downstream 2140947 49304608 ~ 49305252 (-) True G59951
TU80719 other downstream 2362266 49062621 ~ 49083933 (-) False LOC103030200
TU80460 other downstream 3526818 47816355 ~ 47919381 (-) False selenok
TU81746 other upstream 245599 51706338 ~ 51708112 (-) True G60627

Expression Profile